RNA id: TU2023742


Basic Information

Item Value
RNA id TU2023742
length 286
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G1766812
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 3818598 ~ 3818883 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtagaagcctcttggacccagaggtggcgctctgGTAACatttgcagtgcggtagcagagagaacagtctatgactagggtggctggagtctttgacaatttttagggccttcctctgacacagcctggtatagaggtcctggatggcagaaagcttggccccagtgatgtactggaccgtacgcactaccctctgtagtgccttgcggtcagaggacgagcagttgccataccaggcagtgatgcaacccgtcaggatgttctcgatggtgcagctgaataacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2023693 lncRNA downstream 35995 3782394 ~ 3782603 (-) True G1766764
TU2023691 lncRNA downstream 37962 3780216 ~ 3780636 (-) True G1766762
TU2023685 lncRNA downstream 42542 3775667 ~ 3776056 (-) True G1766756
TU2023369 lncRNA downstream 464813 3331573 ~ 3353785 (-) True G1766446
TU2023015 lncRNA downstream 500199 3318185 ~ 3318399 (-) True G1766114
TU2023746 lncRNA upstream 3440 3822323 ~ 3822645 (-) True G1766816
TU2023874 lncRNA upstream 105772 3924655 ~ 3924952 (-) True G1766926
TU2023875 lncRNA upstream 106276 3925159 ~ 3925361 (-) True G1766927
TU2023876 lncRNA upstream 106484 3925367 ~ 3925658 (-) True G1766928
TU2023879 lncRNA upstream 107945 3926828 ~ 3927105 (-) True G1766931
XM_021578637.2 mRNA downstream 44031 3451375 ~ 3774567 (-) False fgf14
XM_021578638.2 mRNA downstream 261370 3451375 ~ 3557228 (-) False fgf14
XM_036958513.1 mRNA downstream 506558 3016850 ~ 3312040 (-) False nalcn
XM_021578646.2 mRNA upstream 463095 4281978 ~ 4294159 (-) False shox
XM_021578647.2 mRNA upstream 463095 4281978 ~ 4294159 (-) False shox
XM_021578648.2 mRNA upstream 463095 4281978 ~ 4294159 (-) True shox
XM_036958523.1 mRNA upstream 743340 4562223 ~ 4605373 (-) False si:ch211-269e2.1
XM_021578649.2 mRNA upstream 743340 4562223 ~ 4609211 (-) False si:ch211-269e2.1
TU2023362 other downstream 44589 3447431 ~ 3774009 (-) True fgf14
TU2023360 other downstream 367260 3447431 ~ 3451338 (-) False fgf14
TU2023027 other downstream 492255 3325721 ~ 3326343 (-) True G1766126
TU2020381 other downstream 2390878 1424721 ~ 1427720 (-) True klf5b
TU2020188 other downstream 2598881 1218802 ~ 1219717 (-) True G1763459
TU2026425 other upstream 1981878 5800761 ~ 5825307 (-) True G1769281
TU2026785 other upstream 2141267 5960150 ~ 5960815 (-) True G1769618
TU2028322 other upstream 3432901 7251784 ~ 7256717 (-) True G1771092
TU2028728 other upstream 3643330 7462213 ~ 7464692 (-) True G1771426
TU2031399 other upstream 4806139 8625022 ~ 8641138 (-) True LOC110501323

Expression Profile