RNA id: TCONS_00004899


Basic Information

Item Value
RNA id TCONS_00004899
length 792
RNA type mRNA
GC content 0.39
exon number 4
gene id XLOC_002634
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11382365 ~ 11385155 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAGAGGAATATctgacgcaaaaaaaaaaaaacagATCATGGAGGTGACATCTCAACCGTCGGCGTTTCATCCCCAAGAATTTCACTCAGGCTTGATGAGCTGCTGTGATGACGTGGGCGTATGTTGTTGTGGCCTTTTCTGTCTCCCGTGTATGGGCTGTTCCATCGCCAGTGACATGAACGAGTGCTGCTTGTGCGGTTTAGGCATGCCGATGAGGAGTGTATACAGAACTAAATACAACATAGAGGGATCCATGTGCAATGACTGGGCTGCCACTACCTTCTGCTTTACCTGTGCGGCCTGTCAGCTTAAGAGAGACATCGACATTAGAAAGAGTAACGGCACGCTGAAATTATGAAAACTGGAAAAGAGCACTACAATTTTTAACTAATAAGTACTTAAATGCTGCTCTAGAAAATATGAGATCAAAGAAAGATGAAGGGGTCAGTCATTTGATAAGTAAGGAAGAGTTTAATTCAGCTAAGTAAAATacattgtacagtatttgtgCATGCAGTTCGTAATTTTCCTATTTGGAAACTGTTCATTCAAAgttatattgtcattattatttaaatgtactttaaataaatTTTCACATTTTCCAAGAAGTGTATAGCATTGCAGAGTTGCAGTGTGTTATGTCTGTGCATTGTCTGTTAACATTttgacacgttttttttttttttttgctaaactcTTCCAATCTCAGTCCCTGCTTCATCAGGGGTcgacagtagaatgaaccacccatCACTCAATCTAACTAATAAATATTTCATGAATGTGA

Function

GO:

id name namespace
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050809-124 Predicted to be involved in positive regulation of transcription by RNA polymerase II. Is expressed in gut. Orthologous to human PLAC8 (placenta associated 8).

Ensembl:

ensembl_id ENSDART00000064214

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004895 lncRNA downstream 49252 11331969 ~ 11333113 (-) False XLOC_002632
TCONS_00006010 lncRNA downstream 594716 10784334 ~ 10787649 (-) True XLOC_002626
TCONS_00006009 lncRNA downstream 668138 10712178 ~ 10714227 (-) True XLOC_002625
TCONS_00004883 lncRNA downstream 668144 10712178 ~ 10714221 (-) False XLOC_002625
TCONS_00004881 lncRNA downstream 803533 10564261 ~ 10578832 (-) False XLOC_002624
TCONS_00006011 lncRNA upstream 510218 11895373 ~ 11898575 (-) True XLOC_002638
TCONS_00006012 lncRNA upstream 1913684 13298839 ~ 13301973 (-) True XLOC_002642
TCONS_00006013 lncRNA upstream 3645851 15031006 ~ 15042748 (-) True XLOC_002656
TCONS_00006014 lncRNA upstream 3647817 15032972 ~ 15034960 (-) True XLOC_002657
TCONS_00004942 lncRNA upstream 3697255 15082410 ~ 15084047 (-) False XLOC_002660
TCONS_00004897 mRNA downstream 5874 11371961 ~ 11376491 (-) False XLOC_002633
TCONS_00004898 mRNA downstream 6355 11372428 ~ 11376010 (-) True XLOC_002633
TCONS_00004893 mRNA downstream 28896 11324515 ~ 11353469 (-) False XLOC_002632
TCONS_00004894 mRNA downstream 29264 11327355 ~ 11353101 (-) False XLOC_002632
TCONS_00004896 mRNA downstream 30832 11347501 ~ 11351533 (-) True XLOC_002632
TCONS_00004901 mRNA upstream 9373 11394528 ~ 11397590 (-) True XLOC_002635
TCONS_00004902 mRNA upstream 208843 11593998 ~ 11761927 (-) False XLOC_002636
TCONS_00004904 mRNA upstream 405726 11790881 ~ 11840353 (-) True XLOC_002637
TCONS_00004905 mRNA upstream 1263275 12648430 ~ 12650259 (-) False XLOC_002639
TCONS_00004906 mRNA upstream 1263505 12648660 ~ 12652512 (-) True XLOC_002639
TCONS_00004879 other downstream 1049938 10319308 ~ 10332427 (-) False XLOC_002623
TCONS_00004880 other downstream 1052811 10329464 ~ 10329554 (-) True XLOC_002623
TCONS_00004869 other downstream 1844039 9534782 ~ 9538326 (-) False XLOC_002618
TCONS_00004859 other downstream 2240686 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004856 other downstream 2292729 9037358 ~ 9089636 (-) False XLOC_002608
TCONS_00004903 other upstream 376225 11761380 ~ 11764439 (-) True XLOC_002636
TCONS_00004913 other upstream 1919910 13305065 ~ 13305183 (-) True XLOC_002643
TCONS_00004918 other upstream 2221872 13607027 ~ 13607143 (-) True XLOC_002646
TCONS_00004919 other upstream 2226978 13612133 ~ 13612248 (-) True XLOC_002647
TCONS_00004920 other upstream 2546414 13931569 ~ 13931696 (-) True XLOC_002648

Expression Profile

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