RNA id: TCONS_00051461


Basic Information

Item Value
RNA id TCONS_00051461
length 1193
lncRNA type antisense
GC content 0.33
exon number 6
gene id XLOC_026400
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 28801366 ~ 28905492 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTTTTCAAACGAGGAAGTGAAGTCAAGTCCGCCATTTCATCTTCTTCTTTATATCggAAAAGAAAGGAATCATGCAAGGATGCAAGCTGAAGGAAAGGACAACTCTCACATCAGTGCATTACTAATTGTTTGACTTCATCATCAAGCACACCagGTGGTGCAGTGGTACAGTGGATAGCTCTGTTGCCTCCCAGCAAAAATGTTTCTGGTtggagcatcggctgggtcagttggcatttctgtgtgaagtttttatgttctccacttgttggcgtgggtctcctccgggtgctccggtttcccccacaagacatgcggtacagatgaattggctcagattgtgaaGGACCGGGAATGcaacaccagttactcttaagtcaagaaccaaatgaaGCACCAGAGTACAGATTATGGAGGTTCCTTGTAAAGATGAACCCAGGGAAGGATCGAAAGTGGAGAAGACCAGATCAAGAAAGACCACATCAAGATCTGCGGTCAGTTCAAAGGATGTTTTGCattggacagttttttttttggatttgacCCTTGCTCGCCCCTGACCTCATTCTTGGACTGCCCTGTTGgattttcagtttgttttatttattttttttttttttggttctgggtagatgataataaatatttagttgtaattatttaaataatatgtttttgttaaatatgcgatttctgtgtttgttctgtctacTCGTACTTGTTTAATCTTGTTTCTgtaattatcatttgtttatttgacccttGCCTCGCCTCTGATCTTGTTTTTGGATTgccctttatatatatttttaattattggttCTGGGTATatggttataaaatatttgttaatttaattaatatgcattttataaaaaatatatatatttttttgtgtttattctgtatctatttatctaatttgtatatacatgtgtgtttgtatgttcttcttatTCTGTATATCCACTTACctaatttttacttttatatttatttgcatttaatttgtgataattctgtatgcatttatttatctaattcatatatttatttgtattgcattgatccatctgttgttgtttttttgtatgcaactatttatataatttatatacattatatatttgtatttatcaatttatattcttcctttaaagcaatttttttaaataaagcaatttaaactaa

Function

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003146 heart jogging biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:1905330 regulation of morphogenesis of an epithelium biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0030510 regulation of BMP signaling pathway biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:2000826 regulation of heart morphogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0048320 axial mesoderm formation biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0001947 heart looping biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000151495

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051458 lncRNA downstream 29078 28869610 ~ 28871148 (-) False XLOC_026404
TCONS_00052466 lncRNA downstream 143606 28754734 ~ 28756620 (-) True XLOC_026399
TCONS_00053040 lncRNA downstream 143700 28752313 ~ 28756526 (-) False XLOC_026399
TCONS_00053039 lncRNA downstream 143700 28752313 ~ 28756526 (-) False XLOC_026399
TCONS_00053038 lncRNA downstream 143791 28752313 ~ 28756435 (-) False XLOC_026399
TCONS_00053042 lncRNA upstream 471121 29376613 ~ 29382605 (-) True XLOC_026407
TCONS_00052467 lncRNA upstream 717625 29623117 ~ 29624786 (-) False XLOC_026410
TCONS_00052468 lncRNA upstream 717996 29623488 ~ 29625626 (-) False XLOC_026410
TCONS_00052469 lncRNA upstream 718605 29624097 ~ 29625576 (-) False XLOC_026410
TCONS_00052470 lncRNA upstream 718605 29624097 ~ 29625935 (-) False XLOC_026410
TCONS_00051459 mRNA downstream 27470 28869610 ~ 28872756 (-) True XLOC_026404
TCONS_00051456 mRNA downstream 43031 28851175 ~ 28857195 (-) True XLOC_026402
TCONS_00051454 mRNA downstream 71657 28822065 ~ 28828569 (-) False XLOC_026401
TCONS_00051455 mRNA downstream 71984 28823675 ~ 28828242 (-) True XLOC_026401
TCONS_00051452 mRNA downstream 149731 28718817 ~ 28750495 (-) True XLOC_026398
TCONS_00051463 mRNA upstream 581808 29487300 ~ 29508959 (-) False XLOC_026408
TCONS_00051464 mRNA upstream 583844 29489336 ~ 29506960 (-) True XLOC_026408
TCONS_00051467 mRNA upstream 750185 29655677 ~ 29671653 (-) False XLOC_026411
TCONS_00051469 mRNA upstream 768816 29674308 ~ 29688399 (-) False XLOC_026412
TCONS_00051470 mRNA upstream 769136 29674628 ~ 29679471 (-) False XLOC_026412
TCONS_00051457 other downstream 40826 28859284 ~ 28859400 (-) True XLOC_026403
TCONS_00051431 other downstream 1252403 27643356 ~ 27647823 (-) False XLOC_026385
TCONS_00051424 other downstream 1816812 27083298 ~ 27083414 (-) True XLOC_026381
TCONS_00051423 other downstream 1834106 27065385 ~ 27066120 (-) True XLOC_026380
TCONS_00051408 other downstream 2237061 26663048 ~ 26663165 (-) True XLOC_026371
TCONS_00051462 other upstream 346457 29251949 ~ 29252065 (-) True XLOC_026406
TCONS_00051465 other upstream 647149 29552641 ~ 29552762 (-) True XLOC_026409
TCONS_00051466 other upstream 749469 29654961 ~ 29663743 (-) False XLOC_026411
TCONS_00051468 other upstream 750240 29655732 ~ 29663763 (-) True XLOC_026411
TCONS_00051472 other upstream 781217 29686709 ~ 29687763 (-) True XLOC_026412

Expression Profile

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