RNA id: TU2025500


Basic Information

Item Value
RNA id TU2025500
length 1887
lncRNA type antisense_over
GC content 0.59
exon number 11
gene id G1768413
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 5103454 ~ 5110473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATAATGCCTTTGTGTGTGGCCGCAACGTGGCCCTGGGCGGTGCGTGTGGTCACCACGGCGTGGTAGGTCTGGGCGCTCTCCAGGCCGCCTACAGTGAGCTCCGTGCCTGTCACATTCCTCCTCAGCACCAGTGTGTGGTCGCGCAGGCGCGTCACCACCACCTCGAAGTAGGCTATGAGCTTGGGGTCCGGGCTGGCCCAGCGCAGGGTCAGGccactggaagtggtgttggctACGTGCAACTCCTCTTGCTTTCTTGGATGGACTGCCTGGTGATTTTCGTGGTGTTTTTGATGTTTCCCTTGGGCAGCAGTCGGCCAAAGTTCTGAATGTGCTTGTCGTAGAAGTGTGAGGTGCTGGTCAGCCTCTTGAAGAAGACGTCGGAGGGCTCACTGGCCATGCGCATCATCACGCGGGCGTCCCCAGCACTAAGTTTCTCGCCAACGCCCAGGATGACCAAGAAATAGCCCTTGCACTTGGCATCGGTGGCCACGGCAACCAGccgctcctcatcctcctccactgGGCCTGTCACGAACAATGTCAGCACCTTGAGGTCACGCTGGTGGGGCGCCCTTTCAAACACCTGCTCCACCGTGTGCTCGATGGCTGCCGCCAGCGCCCGCCCACCCTCCAGTTGGGGCGTTTTGTCCAGGAGGAAGTTGCGGATGTCTTGGGCCGAGCGGTGGTCGGTCAGACCCACGTCCACGCGGATCGGAGAGCCGCTGCTGTTGCGCAGGAACTCGTAGGGTGCCTGCTGGATCACAGCCACACGGGCGTGGTGGATGGATGCCATAGGGTCTGACGAGACTTCAAGTTGCTCTACAATGTGAGCAACATAGCGTTTAATCTCGGTGAAGACAGTGGGGTAGGTGGTCTCGGAGCTGTCCATGACGAAGGCCATGTCAATGTCCACGTCAGTGGTGGAGGACCTCCTGTCTCTCGACTGCTGAGGGGGGACGTAGTCACACATTTGCTCATGACCTTTTGGATAGCCGAGTTGTACTGTGCACTTCCGGGATTAGGCAGTACGATCACCTGACCCAGTGCTGACCCAGTGTTGTTCATCTTCAGGGCTCTGGTAAGCTGGCCATCCTCTTTGTTGACCAGAAACACCGAGGCGATGCCGGAGTCATAGAGACGGAGGGCCGCGGCGCTGACTGCCCGCTGATCCTTCACTGGCCCGTTGACAAAGAATATGGCCACCTTCCTCATGAGGAAGCCGCTGCGCACCCTCTTGAAGGTGTTCTGCGCCAGGAAGTTCATGGCCGTCTCCAGGCTGCGCTGTTTGCGCGTCTGTAATGCCTGCAAGCCTTCCACGCGCTGCACCAGGGAGCGGCGTTTCAGCGCATCGGCAAAGCGGATCTCGGTGGTCACCTCGTTGTTGTAGAGGGTGAGGGCCACGCGGGCACCGCGTGGGCAATTGCTCTCGGAGATGGTGATGTTGCCGACCAGGCGGAGCACGGCGTCACGCATGTTGTTGAAGGCGGGCCGACCCACGCCGTCTGAGGCGTCCAGGGCGAAGGCTAGCTCAGTGGGGTAGAGAGGGCACTCCTGTTGACCATAGCAGCAAGGACAGTTGTCTCTGATTTTCTTCACAAGGTCACATTGCACAACGCCAGGTCCTCTCGGTCCTTTCTGGCCATAAGGCCCGGGGTATCCAACCTCTCCCTTTTGACCCGGAGTACCGATTTCACCTGAAACACCCCTCTGGCCACGgtttcctatgggtcctggtccgcCATTGTTTCCTCCATCACCTGCCGCCCCCTTTGGTCCTGGGAATCCTGGGAAGCCCTCATCACCCTTTCTTCCTTTGGGCCCTGCGATACCAAATCCATCTCGACCATCTTCGCCCTGTAAGAAGAGAATACTGAGCTTACCGC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2025527 lncRNA downstream 24139 5076598 ~ 5079315 (-) True G1768437
TU2025479 lncRNA downstream 71943 5028749 ~ 5031511 (-) True G1768402
TU2025304 lncRNA downstream 146229 4956975 ~ 4957225 (-) True G1768237
TU2025297 lncRNA downstream 152970 4949389 ~ 4950484 (-) True G1768230
TU2025265 lncRNA downstream 167788 4908314 ~ 4935666 (-) True G1768198
TU2025489 lncRNA upstream 5424 5115897 ~ 5119719 (-) True G1768410
TU2025590 lncRNA upstream 95095 5205568 ~ 5205775 (-) True G1768498
TU2025592 lncRNA upstream 96210 5206683 ~ 5206925 (-) True G1768500
TU2025605 lncRNA upstream 104745 5215218 ~ 5217126 (-) True G1768513
TU2025610 lncRNA upstream 109714 5220187 ~ 5220396 (-) True G1768518
XM_021578695.2 mRNA downstream 185482 4794026 ~ 4917972 (-) False LOC110501274
XM_021578696.2 mRNA downstream 185482 4794026 ~ 4917972 (-) False LOC110501274
XM_021578697.2 mRNA downstream 185482 4794026 ~ 4917972 (-) True LOC110501274
XR_002470290.2 mRNA downstream 311047 4790325 ~ 4792407 (-) True LOC110502104
XM_036958539.1 mRNA downstream 347193 4680056 ~ 4756261 (-) True LOC110501269
XM_021578706.2 mRNA upstream 67314 5177787 ~ 5195340 (-) False LOC110501278
XR_005038767.1 mRNA upstream 67314 5177787 ~ 5195340 (-) True LOC110501278
NM_001197215.1 mRNA upstream 74376 5184849 ~ 5186616 (-) True trim63b
XM_036959575.1 mRNA upstream 114089 5224562 ~ 5226359 (-) True lrrc3
XM_036958552.1 mRNA upstream 133928 5244401 ~ 5410474 (-) False pcbp3
TU2023362 other downstream 1329445 3447431 ~ 3774009 (-) True fgf14
TU2023360 other downstream 1652116 3447431 ~ 3451338 (-) False fgf14
TU2023027 other downstream 1777111 3325721 ~ 3326343 (-) True G1766126
TU2020381 other downstream 3675734 1424721 ~ 1427720 (-) True klf5b
TU2020188 other downstream 3883737 1218802 ~ 1219717 (-) True G1763459
TU2026425 other upstream 690288 5800761 ~ 5825307 (-) True G1769281
TU2026785 other upstream 849677 5960150 ~ 5960815 (-) True G1769618
TU2028322 other upstream 2141311 7251784 ~ 7256717 (-) True G1771092
TU2028728 other upstream 2351740 7462213 ~ 7464692 (-) True G1771426
TU2031399 other upstream 3514549 8625022 ~ 8641138 (-) True LOC110501323

Expression Profile