RNA id: TU2028844


Basic Information

Item Value
RNA id TU2028844
length 310
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1771528
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 7689901 ~ 7690210 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accttttccccctcaggagactgaaaagatttggcatgggcccccagatcctcaaaaggttctacagctgcaccatcgagagcatcctgaccggttgcatcaccgcctggtatggaaactgctcggtaTCTGAGCGTAAGGTGATACAGAgtgtagtgcgaacggcccagtaaatcactggggccaagcttccttaatccaggacctatataacgGTACcgtagcgccaagtctaggaccaaaaggctcctcaacagcttctaccaccaagccattagactgctgaacaattaataaaaatcGCCACCGt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2028840 lncRNA downstream 3178 7686495 ~ 7686723 (-) True G1771524
TU2028820 lncRNA downstream 16639 7672932 ~ 7673262 (-) True G1771506
TU2028817 lncRNA downstream 17575 7672086 ~ 7672326 (-) True G1771503
TU2028678 lncRNA downstream 88945 7598040 ~ 7600956 (-) False G1771387
TU2028845 lncRNA upstream 228 7690438 ~ 7690675 (-) True G1771529
TU2029163 lncRNA upstream 49915 7740125 ~ 7742305 (-) True G1771809
TU2029172 lncRNA upstream 64865 7755075 ~ 7755384 (-) True G1771818
TU2029174 lncRNA upstream 69677 7759887 ~ 7760288 (-) True G1771820
TU2029189 lncRNA upstream 85570 7775780 ~ 7779724 (-) True G1771827
XM_021578770.2 mRNA downstream 21277 7608184 ~ 7668624 (-) False LOC110501300
XM_021578776.2 mRNA upstream 29260 7719470 ~ 7736799 (-) True LOC110501302
XR_005038774.1 mRNA upstream 101112 7791322 ~ 7905094 (-) False arhgef7a
XR_005038775.1 mRNA upstream 101112 7791322 ~ 7905094 (-) False arhgef7a
XR_005038776.1 mRNA upstream 101112 7791322 ~ 7905094 (-) False arhgef7a
XR_005038777.1 mRNA upstream 101112 7791322 ~ 7905094 (-) False arhgef7a
TU2028728 other downstream 225209 7462213 ~ 7464692 (-) True G1771426
TU2028322 other downstream 433184 7251784 ~ 7256717 (-) True G1771092
TU2026785 other downstream 1729086 5960150 ~ 5960815 (-) True G1769618
TU2026425 other downstream 1864594 5800761 ~ 5825307 (-) True G1769281
TU2023362 other downstream 3915892 3447431 ~ 3774009 (-) True fgf14
TU2031399 other upstream 934812 8625022 ~ 8641138 (-) True LOC110501323
TU2031467 other upstream 1046969 8737179 ~ 8758540 (-) False LOC110501325
TU2031468 other upstream 1046969 8737179 ~ 8743033 (-) True LOC110501325
TU2031541 other upstream 1073082 8763292 ~ 8768047 (-) False LOC110502107
TU2031542 other upstream 1073082 8763292 ~ 8768047 (-) True LOC110502107

Expression Profile