RNA id: TCONS_00051476


Basic Information

Item Value
RNA id TCONS_00051476
length 1244
lncRNA type antisense_over
GC content 0.46
exon number 4
gene id XLOC_026415
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29835165 ~ 29863606 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAAACATCAATCAGGAAGTGGGCCCAGCAGCACATGAGGCGATGGGGACATAGAGACAGTGGACAATCCTTGGTTAAAGTCAGCCAGACTGCAGCCCTGATGCACAAGTGCTGCACTGTGGAATCAGTATTCCGAGCTGGTTCCTATGGACACAGCATTCTTAAAGCCAGCAACATCATCACCAGACTCCTGAACAGAAGACAAACAGGCCCTGCGCGTGCTTTCTCGCTGCCCCACTAGAGGGCGAGTGGTGCACAACCGCAGGACCGCCTGTCTACATGTGgagatagacacacacacaaacacagggaacGAAGGACTGGTCATCGCGCTGAGCAGTGGGTGATAAAACTACTAATTAGCCACAGGCTGTTCATCTTTTCCATTTATAGCTGACAGTATGTGCCTCTTGGACAATGAAGAGGATCATAGGAGAAGGAAATGCTCACCTGCAGACACGAAGAGGATTCCTGCACTGAGGATGATATTGTGGCGGGACTTGTAGAACTCGCTGGCAGCTATACAGAGACCACCCATGAAGAGCAGGATGACGCTGAGGATGGGGAAGATACTAGACGCTCGCACGGCTCCTACACAtgcagacacagagagagagagagagagagagagagagagagagagagagagagagagaacacaagGTGAGCATAAGATGTTTTCAGTTCCAGAATATTACTTGTTGAATGAATCTGTGCAAAGTACAGTGAGAGAGGGACCATGCCGGATGAAGAAAGCTGTGATTTCAGCCAATCGACACTTTGTCAGTAGAGTAAACAACACTTGCACCCTTTAAAATGGTGCGGAAGAGCAATTAGAGGTCAGAAGTCTCACCTAACACTCGTACTCCATGACTGAGAAGGGCGAGAGACACCAGACCTTTTACAGATGCCTCTATTTGCACACAATATGTTTGTAGTGAGACTTCAACCAAAAAAAGCTGGCTTCTTTCGAGCCATGAAATGACAAGTGAATGTGCTAATGAATGTTTTTAGGACAGCCTGCCAACTCACCAAGTTATTCAACTCAATGTTTGAGTAGCTTTTAAAGATAAAGTTCTACTTTTAAATAAGTGCCTCAGCCTACACTTTTTGtacaaacataaaatacattgctccaaGTACGTTTCGTAACATGTTTCTGGTAGAAAATCCACcggagggcgctgtctacatttttgcgaatgtGAAATGCATTACTTGGGCtacattttgttatttgtttC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051473 lncRNA downstream 118020 29713211 ~ 29717145 (-) True XLOC_026413
TCONS_00052470 lncRNA downstream 209230 29624097 ~ 29625935 (-) False XLOC_026410
TCONS_00052468 lncRNA downstream 209539 29623488 ~ 29625626 (-) False XLOC_026410
TCONS_00051496 lncRNA upstream 59571 29923156 ~ 29926774 (-) True XLOC_026422
TCONS_00051501 lncRNA upstream 110883 29974468 ~ 29975528 (-) True XLOC_026424
TCONS_00053046 lncRNA upstream 131310 29994895 ~ 30004929 (-) True XLOC_026425
TCONS_00053047 lncRNA upstream 156251 30019836 ~ 30023485 (-) False XLOC_026426
TCONS_00051502 lncRNA upstream 158493 30022078 ~ 30023202 (-) True XLOC_026426
TCONS_00051469 mRNA downstream 146766 29674308 ~ 29688399 (-) False XLOC_026412
TCONS_00051471 mRNA downstream 146795 29686639 ~ 29688370 (-) False XLOC_026412
TCONS_00051470 mRNA downstream 155694 29674628 ~ 29679471 (-) False XLOC_026412
TCONS_00051467 mRNA downstream 163512 29655677 ~ 29671653 (-) False XLOC_026411
TCONS_00051463 mRNA downstream 326206 29487300 ~ 29508959 (-) False XLOC_026408
TCONS_00051477 mRNA upstream 3628 29867213 ~ 29871364 (-) False XLOC_026416
TCONS_00051478 mRNA upstream 3701 29867286 ~ 29870848 (-) False XLOC_026416
TCONS_00051480 mRNA upstream 4397 29867982 ~ 29869120 (-) False XLOC_026416
TCONS_00051483 mRNA upstream 9234 29872819 ~ 29891500 (-) False XLOC_026419
TCONS_00051484 mRNA upstream 16945 29880530 ~ 29891456 (-) False XLOC_026419
TCONS_00051474 other downstream 64907 29770142 ~ 29770258 (-) True XLOC_026414
TCONS_00051472 other downstream 147402 29686709 ~ 29687763 (-) True XLOC_026412
TCONS_00051468 other downstream 171402 29655732 ~ 29663763 (-) True XLOC_026411
TCONS_00051466 other downstream 171422 29654961 ~ 29663743 (-) False XLOC_026411
TCONS_00051465 other downstream 282403 29552641 ~ 29552762 (-) True XLOC_026409
TCONS_00051479 other upstream 3819 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051481 other upstream 5050 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051482 other upstream 5314 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051520 other upstream 590768 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051529 other upstream 936956 30800541 ~ 30800658 (-) True XLOC_026441

Expression Profile

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