RNA id: TU2032194


Basic Information

Item Value
RNA id TU2032194
length 541
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1774497
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 9878264 ~ 9878804 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTGCCCGCTTCCTACCTCCGGCCTGGAGGTACATCCCATTACCAACTGATTGGCTAATTGCACATTCAATTTCTCTCTGGTTGTCTAGTATGTTATCATATGGGCTGTTACATCTCATGACAGCACAGGACGCTCTCTATGCCTATGCTtgtcatttcaacaaaaaaaatcggaatatttttttctctctcttctcctctcaatTATCTTCTCCCTCCGCACCGTCCTTGGCGAGAACCATTCAAACTCTTCTTGCTATTCTTCTCTGAATTGTGCTGTTTtctaaaagagagaaaagagaattgACGAGAGCAGAAAAAAAGCGAGCCAGAGTTGAAGGAAATGTCAAATGTGTCAGGCACAATAGCACAGAGCCTTTAAGAGAGGAGAACATTGTTTACAATGCGATGCCTGCAGTTTCCATAGAAATATGTCTATAGAGAACAGGCAAGATGAAATGTCACATTCTCTCTATGATCACTCAGTCAGAGACAGTGTGCgcgtgggcgtgtgtgtgtgtgtgtgacagctgaCGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2032233 lncRNA downstream 10522 9867536 ~ 9867742 (-) True G1774528
TU2032232 lncRNA downstream 11437 9866384 ~ 9866827 (-) True G1774527
TU2032230 lncRNA downstream 13301 9864753 ~ 9864963 (-) True G1774525
TU2032190 lncRNA downstream 48788 9829206 ~ 9829476 (-) True dipk2b
TU2032159 lncRNA downstream 103471 9774413 ~ 9774793 (-) True G1774463
TU2032193 lncRNA upstream 130 9878934 ~ 9912331 (-) True LOC118943578
TU2032256 lncRNA upstream 52735 9931539 ~ 9967968 (-) True G1774550
TU2032351 lncRNA upstream 166815 10045619 ~ 10047479 (-) True G1774636
TU2032328 lncRNA upstream 203031 10081835 ~ 10083284 (-) True G1774615
TU2032331 lncRNA upstream 211165 10089969 ~ 10091266 (-) True G1774618
XM_021578880.2 mRNA downstream 42251 9829322 ~ 9836013 (-) False dipk2b
XM_036958699.1 mRNA downstream 42767 9829322 ~ 9835497 (-) False dipk2b
XM_021578881.2 mRNA downstream 140368 9735242 ~ 9737896 (-) False fundc1
XM_036958692.1 mRNA downstream 143330 9713415 ~ 9734934 (-) False efhc2
XM_036958690.1 mRNA downstream 180240 9676683 ~ 9698024 (-) True ndp
LOC118943652 mRNA upstream 4866 9883670 ~ 9883794 (-) True LOC118943652
XR_005038788.1 mRNA upstream 25246 9904050 ~ 9912343 (-) False LOC118943578
XM_036958708.1 mRNA upstream 190739 10069543 ~ 10081582 (-) False slc35a5
XM_036958706.1 mRNA upstream 190739 10069543 ~ 10081622 (-) False slc35a5
XM_036958705.1 mRNA upstream 190739 10069543 ~ 10081799 (-) False slc35a5
TU2032076 other downstream 140408 9735242 ~ 9737856 (-) True fundc1
TU2031837 other downstream 586289 9289279 ~ 9291975 (-) True rpl8
TU2031771 other downstream 755015 9101752 ~ 9123249 (-) False G1774133
TU2031767 other downstream 774825 9101752 ~ 9103439 (-) False G1774133
TU2031716 other downstream 815063 9058976 ~ 9063201 (-) True gpr161a
TU2035106 other upstream 1962269 11841073 ~ 11843059 (-) True G1777196
TU2035206 other upstream 2162304 12041108 ~ 12041622 (-) True G1777286
TU2035374 other upstream 2389413 12268217 ~ 12270114 (-) True G1777441
TU2035584 other upstream 2741778 12620582 ~ 12624694 (-) True LOC110501411
TU2036122 other upstream 3289976 13168780 ~ 13172979 (-) False G1778140

Expression Profile