RNA id: TCONS_00051479


Basic Information

Item Value
RNA id TCONS_00051479
length 137
RNA type snoRNA
GC content 0.47
exon number 1
gene id XLOC_026417
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29867404 ~ 29867540 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCACTGTTCGTAACCTGTTTCAGCCTACCAGTCTGAGATTTGGGTTCCATTCCAGTGCAAGATTAATAAACTCAGTGAGGCAGGGGAGTGGTGCCTCATTTGTGCTTTCTCCCTGTTCACTCTCTGATGACATTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000118613

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053045 lncRNA downstream 3798 29835165 ~ 29863606 (-) False XLOC_026415
TCONS_00053044 lncRNA downstream 3798 29835165 ~ 29863606 (-) True XLOC_026415
TCONS_00051475 lncRNA downstream 3800 29835165 ~ 29863604 (-) False XLOC_026415
TCONS_00051476 lncRNA downstream 3819 29835165 ~ 29863585 (-) False XLOC_026415
TCONS_00053043 lncRNA downstream 10936 29835165 ~ 29856468 (-) False XLOC_026415
TCONS_00051496 lncRNA upstream 55616 29923156 ~ 29926774 (-) True XLOC_026422
TCONS_00051501 lncRNA upstream 106928 29974468 ~ 29975528 (-) True XLOC_026424
TCONS_00053046 lncRNA upstream 127355 29994895 ~ 30004929 (-) True XLOC_026425
TCONS_00053047 lncRNA upstream 152296 30019836 ~ 30023485 (-) False XLOC_026426
TCONS_00051502 lncRNA upstream 154538 30022078 ~ 30023202 (-) True XLOC_026426
TCONS_00051469 mRNA downstream 179005 29674308 ~ 29688399 (-) False XLOC_026412
TCONS_00051471 mRNA downstream 179034 29686639 ~ 29688370 (-) False XLOC_026412
TCONS_00051470 mRNA downstream 187933 29674628 ~ 29679471 (-) False XLOC_026412
TCONS_00051467 mRNA downstream 195751 29655677 ~ 29671653 (-) False XLOC_026411
TCONS_00051463 mRNA downstream 358445 29487300 ~ 29508959 (-) False XLOC_026408
TCONS_00051480 mRNA upstream 442 29867982 ~ 29869120 (-) False XLOC_026416
TCONS_00051483 mRNA upstream 5279 29872819 ~ 29891500 (-) False XLOC_026419
TCONS_00051484 mRNA upstream 12990 29880530 ~ 29891456 (-) False XLOC_026419
TCONS_00051485 mRNA upstream 13983 29881523 ~ 29891218 (-) True XLOC_026419
TCONS_00051486 mRNA upstream 26426 29893966 ~ 29899172 (-) False XLOC_026420
TCONS_00051474 other downstream 97146 29770142 ~ 29770258 (-) True XLOC_026414
TCONS_00051472 other downstream 179641 29686709 ~ 29687763 (-) True XLOC_026412
TCONS_00051468 other downstream 203641 29655732 ~ 29663763 (-) True XLOC_026411
TCONS_00051466 other downstream 203661 29654961 ~ 29663743 (-) False XLOC_026411
TCONS_00051465 other downstream 314642 29552641 ~ 29552762 (-) True XLOC_026409
TCONS_00051481 other upstream 1095 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051482 other upstream 1359 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051520 other upstream 586813 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051529 other upstream 933001 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051585 other upstream 2318594 32186134 ~ 32187385 (-) False XLOC_026474

Expression Profile

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