RNA id: TCONS_00051485


Basic Information

Item Value
RNA id TCONS_00051485
length 650
RNA type mRNA
GC content 0.49
exon number 7
gene id XLOC_026419
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29872819 ~ 29891500 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATCTATCTAGGAGCTGGAGTGATGGAAGATAGCCGTTACCACACCGCTCATCGAGGGTTATCTAATTACTCTATTGCTGACCCACAACTGCTTTGTTTGGTTCTTATATTACAGTAGCAGCCAGGTGGGCCGGCAGGATGGGGGATAGGCCTGCAGTTCGAATTTCGGCTGCGATCACACCCGTGCAGCAGATGCTGGCGTCTGGCACTGGGGCTGTGCTCACATCTCTATTTGTCACACCTCTGGATGTAGTGAAGATCAGACTTCAAGCGCAGCAAACTCCTCTCTTTCAAGCCATAGCAGCAGAATCAAGACCCTGGTTTAGGGTCACCCGGCCTTCAAAATggaaatgttttctttattgtaaTGGGTTGATGGACCACGTCTACGTATGTCAGAATATGTCTAGCTGCTCCAACTTGTACAAAACCTCCACCCACTTTAGTGGCACCTTGGATGCATTTGTAAAAATAACCCGCAACGAGGGCCTTCGATCTTTGTGGAGCGGACTTCCTCCCACACTGGTGATGGCGGTTCCTGCTACAGTCATTTACTTCACCTGCTATGACCAGTTGCGGGACTTCCTGTGTTACAGCATGGGCTATCATGGTGACCACATACCTCTCATAGCTGGAGGATTAGCAAGAT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006783 heme biosynthetic process biological_process
GO:0006828 manganese ion transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016530 metallochaperone activity molecular_function
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1250 Predicted to enable metallochaperone activity. Acts upstream of or within heme biosynthetic process. Predicted to be located in mitochondrion. Is expressed in intermediate cell mass of mesoderm. Orthologous to human SLC25A39 (solute carrier family 25 member 39).

Ensembl:

ensembl_id ENSDART00000142118

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053045 lncRNA downstream 17917 29835165 ~ 29863606 (-) False XLOC_026415
TCONS_00053044 lncRNA downstream 17917 29835165 ~ 29863606 (-) True XLOC_026415
TCONS_00051475 lncRNA downstream 17919 29835165 ~ 29863604 (-) False XLOC_026415
TCONS_00051476 lncRNA downstream 17938 29835165 ~ 29863585 (-) False XLOC_026415
TCONS_00053043 lncRNA downstream 25055 29835165 ~ 29856468 (-) False XLOC_026415
TCONS_00051496 lncRNA upstream 31938 29923156 ~ 29926774 (-) True XLOC_026422
TCONS_00051501 lncRNA upstream 83250 29974468 ~ 29975528 (-) True XLOC_026424
TCONS_00053046 lncRNA upstream 103677 29994895 ~ 30004929 (-) True XLOC_026425
TCONS_00053047 lncRNA upstream 128618 30019836 ~ 30023485 (-) False XLOC_026426
TCONS_00051502 lncRNA upstream 130860 30022078 ~ 30023202 (-) True XLOC_026426
TCONS_00051477 mRNA downstream 10159 29867213 ~ 29871364 (-) False XLOC_026416
TCONS_00051478 mRNA downstream 10675 29867286 ~ 29870848 (-) False XLOC_026416
TCONS_00051480 mRNA downstream 12403 29867982 ~ 29869120 (-) False XLOC_026416
TCONS_00051469 mRNA downstream 193124 29674308 ~ 29688399 (-) False XLOC_026412
TCONS_00051471 mRNA downstream 193153 29686639 ~ 29688370 (-) False XLOC_026412
TCONS_00051486 mRNA upstream 2748 29893966 ~ 29899172 (-) False XLOC_026420
TCONS_00051487 mRNA upstream 2748 29893966 ~ 29899230 (-) True XLOC_026420
TCONS_00051488 mRNA upstream 11003 29902221 ~ 29910547 (-) True XLOC_026421
TCONS_00051490 mRNA upstream 23209 29914427 ~ 29941357 (-) False XLOC_026422
TCONS_00051489 mRNA upstream 23209 29914427 ~ 29941357 (-) False XLOC_026422
TCONS_00051482 other downstream 11399 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 12791 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 13983 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051474 other downstream 111265 29770142 ~ 29770258 (-) True XLOC_026414
TCONS_00051472 other downstream 193760 29686709 ~ 29687763 (-) True XLOC_026412
TCONS_00051520 other upstream 563135 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051529 other upstream 909323 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051585 other upstream 2294916 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 3081756 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 3532974 33424192 ~ 33424328 (-) True XLOC_026505

Expression Profile

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