RNA id: TCONS_00004904


Basic Information

Item Value
RNA id TCONS_00004904
length 1755
RNA type mRNA
GC content 0.54
exon number 11
gene id XLOC_002637
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11790881 ~ 11840353 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCATTAGATGGTTCAGTCCGAGGATGGCCGCTGCTGTCGGTGTAAATAAACAGGCGTCGATGGAATCGTGTGTGAGACACGGCCGAGGAACTGCCGCTAATGCGGTGAAGGTGTTGGAGTGTGGTGTGTGTGAGGATGTGTTTTCACTACAAGGTGATAAGGTACCACGACTGCTGCTGTGTGGACACACGGTGTGTCACGACTGCTTGACACGACTGCCTCTCCACGGCAGGGCAGTACGCTGCCCCTTTGATAGACAGGTCACTGAGCTGGGAGACTCAGGTGTGTGGGGCCTGAAGAAGAACTTTGCCTTGCTAGAACTGCTTGAACGGCTACAGAATGGGGCAACCAATCAGTCAGGCATGTCGGAGGATGCGCTTCGTGAGATGGGAGAGTGCATAATCCGCTGTGATGAGGATGAGACTCACACTGCCTCCATGTACTGCACGGTTTGTGCTACGCATCTGTGTGCCGAGTGTTCCCAGCTCACCCACTCCACCCGAACACTGGCAAAGCACCGGCGTGTGCCACTGGCAGACAAACCCCATGAGAAGATGCTCTGCCCGCAGCACCAGGTGCATGCCATTGAGTTTGTCTGCCTGGAGGACGGCTGTCAGCCTGGACCGCTCATGTGCTGCGTCTGCAAGGAGTACGGGAAACATCAAGGGCATAAGCATGCTGTACTAGAGGCTGAAGCCAACCAGATTCGAGCGTCTATCCTGGATATGGCGCACTGCATTCGCACATTCACAGAGGAAGTGTCGGAGTACTCCAGGAAACTAGTGGGCATTGTGCAGCAGATAGAAGGAGGAGAGCAGATTGTGGAGGACAGCATGGGCATCGCTCACACTGAACATGTTCCAGGTACTGCAGAAAGCGCCCGGTCTTGCGTGCGTGCCTACTTTGCAGATCTACATGAGACACTGTGTCGCCAAGAGGAGATGGCTCTGAGTGTGGTGGACGCACACGTCCGAGAAAGGCTGATCTGGCTTCGCCAGCAGCAGGAGGATATGACCATACTGCTGTCTCAGGTGTCCACAGCCTGCCTGCACTGCGAGAAAACACTGCAGCAGGATGATTGCAGGGTGGTTTTGGCGAAACAGGAGATCAACCGGCTGCTGGAGACACTGCAGAAACAGCAGCAGCAGTTTACAGAGCTGGCCGATCACATTCAGCTGGATGCAGGCATCCCTGTTACTTTCACTAAGGACAACCGTGTGCACATTGGCCCAAAGATGGAGATTCGAGTTGTGACTTTAGGTTTAGATGGAGCTGGCAAAACTACTATTCTCTTCAAACTGAAGCAGGATGAGTTTATGCAGCCCATACCAACTATAGGTTTTAATGTAGAAACCGTTGAATACAAAAACCTGAAATTCACCATCTGGGATGTGGGTGGAAAGCATAAACTGCGCCCGCTGTGGAAACACTACTATCTGAACACACAGGCGGTGGTGtttgtgattgacagctgtcacCGAGACCGGCTGATGGAATCTCACAGTGAGCTGGCCAAACTGCTGACGGagaaagagcttagagatgcccTGCTGCTCATCTTCGCCAACAAACAGGACGTCCCTGGTGCAGTGTCTGTGGAGGAGATGACAGAGCTTCTCAGCTTGCACAAACTGTGCTGCGGGCGCAGTTGGCACATTCAGGGCTGTGATGCCCGCAGTGGGATGGGACTCCATGAGGGCCTGGACTGGCTCTCTCGCCAGCTGGTGGCTGCTGGGGTTCTGGATGTGGCCTGA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04121 Ubiquitin system
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-060929-804 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in lysosomal membrane and plasma membrane. Orthologous to human TRIM23 (tripartite motif containing 23).

Ensembl:

ensembl_id ENSDART00000127581

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004895 lncRNA downstream 457768 11331969 ~ 11333113 (-) False XLOC_002632
TCONS_00006010 lncRNA downstream 1003232 10784334 ~ 10787649 (-) True XLOC_002626
TCONS_00006009 lncRNA downstream 1076654 10712178 ~ 10714227 (-) True XLOC_002625
TCONS_00004883 lncRNA downstream 1076660 10712178 ~ 10714221 (-) False XLOC_002625
TCONS_00004881 lncRNA downstream 1212049 10564261 ~ 10578832 (-) False XLOC_002624
TCONS_00006011 lncRNA upstream 55020 11895373 ~ 11898575 (-) True XLOC_002638
TCONS_00006012 lncRNA upstream 1458486 13298839 ~ 13301973 (-) True XLOC_002642
TCONS_00006013 lncRNA upstream 3190653 15031006 ~ 15042748 (-) True XLOC_002656
TCONS_00006014 lncRNA upstream 3192619 15032972 ~ 15034960 (-) True XLOC_002657
TCONS_00004942 lncRNA upstream 3242057 15082410 ~ 15084047 (-) False XLOC_002660
TCONS_00004902 mRNA downstream 28954 11593998 ~ 11761927 (-) False XLOC_002636
TCONS_00004901 mRNA downstream 393291 11394528 ~ 11397590 (-) True XLOC_002635
TCONS_00004899 mRNA downstream 405726 11382365 ~ 11385155 (-) False XLOC_002634
TCONS_00004900 mRNA downstream 406981 11382797 ~ 11383900 (-) True XLOC_002634
TCONS_00004897 mRNA downstream 414390 11371961 ~ 11376491 (-) False XLOC_002633
TCONS_00004905 mRNA upstream 808077 12648430 ~ 12650259 (-) False XLOC_002639
TCONS_00004906 mRNA upstream 808307 12648660 ~ 12652512 (-) True XLOC_002639
TCONS_00004907 mRNA upstream 1239739 13080092 ~ 13179077 (-) False XLOC_002640
TCONS_00004908 mRNA upstream 1244621 13084974 ~ 13178853 (-) False XLOC_002640
TCONS_00004909 mRNA upstream 1249803 13090156 ~ 13116337 (-) False XLOC_002640
TCONS_00004903 other downstream 26442 11761380 ~ 11764439 (-) True XLOC_002636
TCONS_00004879 other downstream 1458454 10319308 ~ 10332427 (-) False XLOC_002623
TCONS_00004880 other downstream 1461327 10329464 ~ 10329554 (-) True XLOC_002623
TCONS_00004869 other downstream 2252555 9534782 ~ 9538326 (-) False XLOC_002618
TCONS_00004859 other downstream 2649202 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004913 other upstream 1464712 13305065 ~ 13305183 (-) True XLOC_002643
TCONS_00004918 other upstream 1766674 13607027 ~ 13607143 (-) True XLOC_002646
TCONS_00004919 other upstream 1771780 13612133 ~ 13612248 (-) True XLOC_002647
TCONS_00004920 other upstream 2091216 13931569 ~ 13931696 (-) True XLOC_002648
TCONS_00004922 other upstream 2486473 14326826 ~ 14488154 (-) False XLOC_002649

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_04650911_04659754.mRNA True 2442 mRNA 0.49 11 CI01000304 4650911 ~ 4660456 (+)