RNA id: TU2035420


Basic Information

Item Value
RNA id TU2035420
length 675
lncRNA type antisense_over
GC content 0.48
exon number 3
gene id G1777484
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 12344131 ~ 12345514 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCTCCCTCCTATCAAGGCTTCCCAGTAGTGGCGCCCGCTGTCGATGTACACATTCCCTGTGATGCCGTAGCTGCCCTGGCTGGTAAAGCGGTCCTGAGTGTGGCTCTTCTTGGACAATGTCTCGTCTCGCTCCACTGTCAGGTTGTCATGGGAGACCTTCAGCTTCTTGTGAGCAGACTTTGGGTCCAACTTGAATGGTTGACCTGTGAATTGATGTTGGTCTTGAGTTTCCAAGGCTCACTGCTGCGACTCCCTGCCTGATTGATGGCCTTGACGATAAACATGTACTTGGTGCCACACTGGAGTCCATGCACCGTGTAGTGGTTCTGCTTGATGTTGGGCACAATCATCCAGCTATCAGCCGAGTTACACAAACTGACAACATTGGCTTGTCCGGTGAAGATTGCATACTGAAGCTCATAGGAGACGACACAGAACTCGTCATCAGACGTCCAGTGAACAGTGATGGTGTCGTTCGATGCCGTACATAATTCCGCCCGGATTATTGGGGGATTTGGTGCTGCAAATAGAAAAATATAGTTACTTTTATTCACGCCAGTTCCTGGTATGTGTCATTTAATGACAACAGTGATGGACAGTTGTCATAACACACAGAAGAGTACCGTACTGCGGATTAACACAATCAGTGTATTTTCTTATGTCCAATGTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2035364 lncRNA downstream 67781 12257304 ~ 12276350 (-) True G1777433
TU2035373 lncRNA downstream 76235 12267517 ~ 12267896 (-) True G1777440
TU2035316 lncRNA downstream 137888 12203892 ~ 12206243 (-) True G1777387
TU2035268 lncRNA downstream 201866 12138888 ~ 12142265 (-) True G1777341
TU2035180 lncRNA downstream 238213 12104164 ~ 12105918 (-) True G1777260
TU2035485 lncRNA upstream 103603 12449117 ~ 12449737 (-) True G1777548
TU2035652 lncRNA upstream 338993 12684507 ~ 12687011 (-) True LOC110501413
TU2035672 lncRNA upstream 365181 12710695 ~ 12711897 (-) True G1777721
TU2035693 lncRNA upstream 407018 12752532 ~ 12760242 (-) False G1777741
TU2035694 lncRNA upstream 407018 12752532 ~ 12760661 (-) True G1777741
XR_002470212.2 mRNA downstream 47846 12287829 ~ 12296285 (-) True LOC110501402
XM_036958743.1 mRNA downstream 154729 12127252 ~ 12189402 (-) True LOC110501397
XM_036958740.1 mRNA downstream 154731 12125451 ~ 12189400 (-) False LOC110501397
XM_036958741.1 mRNA downstream 158104 12125451 ~ 12186027 (-) False LOC110501397
XM_021578938.2 mRNA downstream 166553 12125451 ~ 12177578 (-) False LOC110501397
LOC118943634 mRNA upstream 23660 12369174 ~ 12375707 (-) True LOC118943634
XM_021578952.2 mRNA upstream 76332 12421846 ~ 12426247 (-) False cnmd
XM_036958747.1 mRNA upstream 76332 12421846 ~ 12426247 (-) True cnmd
XM_021578953.2 mRNA upstream 82056 12427570 ~ 12432961 (-) True LOC110501405
XM_036958748.1 mRNA upstream 261795 12607309 ~ 12618523 (-) False LOC110501410
TU2035374 other downstream 74017 12268217 ~ 12270114 (-) True G1777441
TU2035206 other downstream 302509 12041108 ~ 12041622 (-) True G1777286
TU2035106 other downstream 501072 11841073 ~ 11843059 (-) True G1777196
TU2032076 other downstream 2606275 9735242 ~ 9737856 (-) True fundc1
TU2031837 other downstream 3052156 9289279 ~ 9291975 (-) True rpl8
TU2035584 other upstream 275068 12620582 ~ 12624694 (-) True LOC110501411
TU2036122 other upstream 823266 13168780 ~ 13172979 (-) False G1778140
TU2036123 other upstream 823266 13168780 ~ 13172979 (-) False G1778140
TU2036124 other upstream 823266 13168780 ~ 13172979 (-) False G1778140
TU2036125 other upstream 823266 13168780 ~ 13172979 (-) True G1778140

Expression Profile