RNA id: TCONS_00051496


Basic Information

Item Value
RNA id TCONS_00051496
length 835
lncRNA type retained_intron
GC content 0.52
exon number 6
gene id XLOC_026422
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29914427 ~ 29941357 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCCCTGTAACGACACTGCAGCCTGTCCTGATGGAAGCACATGCTGTAAGACTAAAGATGGAGGATGGGCCTGCTGTCCTCTGCCTGAGGCCGTGTGTTGTGAAGACTTCATCCACTGCTGTCCTCATGGCAAGAAATGTGACGTAGCTGCGGGGTCCTGTGAAGACCCTTCAGGCTCTGTGCCCTGGGTGGAGAAGGTGCCCGTCCGTCCAATCAGGAAACAGAAAGTGGCTGTTACAACAGTCTCTCCAGTGTCTTCAGATATTGCCTGTAACGACACTGTGGCCTGTCCTGATGGAAGCACCTGCTGTAAGGATAAAGATGGAGAATGGGGTTGCTGTCCTCTGCCTGAGGCCGTGTGTTGTGAAGACTTCATCCACTGCTGTCCTCATGGTAAGAAATGTAATGTTGCTGCGGGGTCCTGTGATGACCCTTCAGGCTCTGTGCCCTGGATGGACAAGGTGCCCGTCCGTCCAATCAAAAAACAGAAAGTGGCTGTTACACAAGCCTCATCAGCATCTTCAGATGTCCCCTGTAACGACACTGCGGCCTGTCCTGATGGAAGCACATGCTGTAAAACTAAAGATGGAGGATGGGCCTGCTGTCCTCTGCCTGAGGCCGTGTGTTGTGAAGACTTCATCCACTGCTGTCCTCATGGCAAGAAATGTGACGTAGCTGCGGGGTCCTGTGAAGACTCTTCAGGCTCTGTGCCATGGGTGGAGAAGGTGCCCGTCCGTCCAATCAGAAAACAGAAAGTGGCTAATACAAAAGGTACATCAACACAATGAATACAGCGCATTCAAACACTGTATACAATAGGGCTGAAAGATActgg

Function

GO:

id name namespace
GO:0071340 skeletal muscle acetylcholine-gated channel clustering biological_process
GO:0001889 liver development biological_process
GO:0048675 axon extension biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8434 Acts upstream of or within axon extension; liver development; and skeletal muscle acetylcholine-gated channel clustering. Predicted to be active in extracellular region. Is expressed in several structures, including digestive system; hematopoietic system; immature eye; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in dementia (multiple); neurodegenerative disease (multiple); and neuronal ceroid lipofuscinosis 11. Orthologous to human GRN (granulin precursor).

Ensembl:

ensembl_id ENSDART00000151814

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053045 lncRNA downstream 59550 29835165 ~ 29863606 (-) False XLOC_026415
TCONS_00053044 lncRNA downstream 59550 29835165 ~ 29863606 (-) True XLOC_026415
TCONS_00051475 lncRNA downstream 59552 29835165 ~ 29863604 (-) False XLOC_026415
TCONS_00051476 lncRNA downstream 59571 29835165 ~ 29863585 (-) False XLOC_026415
TCONS_00053043 lncRNA downstream 66688 29835165 ~ 29856468 (-) False XLOC_026415
TCONS_00051501 lncRNA upstream 47694 29974468 ~ 29975528 (-) True XLOC_026424
TCONS_00053046 lncRNA upstream 68121 29994895 ~ 30004929 (-) True XLOC_026425
TCONS_00053047 lncRNA upstream 93062 30019836 ~ 30023485 (-) False XLOC_026426
TCONS_00051502 lncRNA upstream 95304 30022078 ~ 30023202 (-) True XLOC_026426
TCONS_00053048 lncRNA upstream 109923 30036697 ~ 30039149 (-) True XLOC_026427
TCONS_00051488 mRNA downstream 12609 29902221 ~ 29910547 (-) True XLOC_026421
TCONS_00051487 mRNA downstream 23926 29893966 ~ 29899230 (-) True XLOC_026420
TCONS_00051486 mRNA downstream 23984 29893966 ~ 29899172 (-) False XLOC_026420
TCONS_00051483 mRNA downstream 31656 29872819 ~ 29891500 (-) False XLOC_026419
TCONS_00051484 mRNA downstream 31700 29880530 ~ 29891456 (-) False XLOC_026419
TCONS_00051497 mRNA upstream 23210 29949984 ~ 29968015 (-) False XLOC_026423
TCONS_00051498 mRNA upstream 23213 29949987 ~ 29968055 (-) False XLOC_026423
TCONS_00051499 mRNA upstream 23217 29949991 ~ 29962345 (-) True XLOC_026423
TCONS_00051500 mRNA upstream 42369 29969143 ~ 29977495 (-) False XLOC_026424
TCONS_00051503 mRNA upstream 117237 30044011 ~ 30123113 (-) False XLOC_026428
TCONS_00051482 other downstream 53032 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 54424 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 55616 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051474 other downstream 152898 29770142 ~ 29770258 (-) True XLOC_026414
TCONS_00051472 other downstream 235393 29686709 ~ 29687763 (-) True XLOC_026412
TCONS_00051520 other upstream 527579 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051529 other upstream 873767 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051585 other upstream 2259360 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 3046200 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 3497418 33424192 ~ 33424328 (-) True XLOC_026505

Expression Profile

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