RNA id: TCONS_00051497


Basic Information

Item Value
RNA id TCONS_00051497
length 3447
RNA type mRNA
GC content 0.44
exon number 11
gene id XLOC_026423
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29949984 ~ 29968055 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACTAAAGGGGCATGTAGGTGTTCAAAACCCAGCAGAATGGCGCTGTTTCCGCAGGTCTCCAATCCGGAACGCAGAGCCCGGCCTGTCTGTCCTGAGCTGTTGCTCCCACTCGGACGAGTTTACCATTCATCTCACAGCAgtagcaacagcagcagcagcgatGGCAGCGCTCAGGACGGCAGTGAACGGACGCTTTCTTCACCCTCTCTCCTTGTCATGTGGGTCGTTGCGCTTCGTCAGCTCCTCCTTCAAGCAATTTAATTGAATTCAATTTCCATAAGAGCTTGAGCATGATGAATCcagattattttttttcatatgcatgTGCAATCAGTGACAATGAATAAACAGCTCTCCACGTGCCCCGCTGTACTCCCCACCCCTCTCTGTCTTTTCGTTTTCTCTCCCTTTttttgtctctttctctctctctgtcttcccAATTGTTTATGTCAGGCTGCAGATCTGACCATCGAGAAGAGCTCGGTGCTGAAGCCAAAGCCAGATCCGTCAACGCTCGTGTTTGGCAAGCAGTTTTCAGACCACATGCTGACCATCAGCTGGTCTGCAGCAGGAGGATGGGAGAACCCTCAGATCAAGCCCTTCCAGAATCTGTCCCTTCACCCAGCATGCTCAGCCCTACATTACTCAATAGAGctctttgAGGGTATGAAGGCCTTTCGGGGAGTGGACAACAACATCCGCCTCTTCAGGCCTATGCTGAATATGGAGCGCATGCATCGGAGTGCTGAAAGGAGTTGTCTGCCTTTGTTTGATAAGGCTGAACTGCTGAAATGCATCAATAAGCTGGTTGAGACTGACCAAGAATGGGTTCCTTACTCCACAGATGCCAGCCTGTACATCAGACCAACATTCATAGGAACCGAACCTTCACTAGGTGTTTCTCGAGCTGGTCACGCGTTGCTGTTTGTCATCGTTGGACCCGTTGGACCTTATTTTGCCACTGGAAGTTTTAATCCGGTGTCCTTGCTGGCAGATCCTCGATACGTCCGGGCCTGGAGGGGTGGCGTCGGAGAGTACAAAATGGGCGGCAACTATGGGCCGACCATCGCTGTCCAGAATGAGGCGGCAAAGCAAGGCTGTCAGCAGGTCCTCTGGCTGTATGGAGAGAGTGAGGAGATCACTGAGGTCGGCACCATGAATCTCTTCATCTACTGGACCACAAAGAAAGGAGAAAAAGAGCTGGTCACTCCTCCACTTGATGGCGTCATTCTTCCAGGAGTCACCAGACAGTCTCTGCTGGACCTCGCCAGAGAATGGGGGGAATTCAAAGTGACTGAGCGGAGAGTTTTCATGAAGGAGCTGTTGGGGGCTTTAGATGAGGGTCGGGTGCTGGAGGTCTTCGGTTCGGGCACTGCATGTGTGGTGTGTCCCGTTGGCAGTCTGCTCTACAAAGGACAAactTACCAAATTCCTACAATGAAGAATGGGCCAGACCTTGCCAAGCGATTCCACAAGGAGCTCACTGACATCCAGTATGGACGTCTTCAGAGGGACTGGGCTCCACTGGTCGTCTAACCGATTGGATGCAGGTTTCACATCTCAAACCTCTCTCATCTCACCGGTTTGTGTGTGTGGACTTCACAGACAGGACTGTTATTCTACAATAACAAAAACCTTTCGAAATAGAAAACCACCTATTAAATATATGCAGTCTGTCCAAACCAGCTTACATCCTGCTTGCTATAGAGGTCTTTATTGCACAATTTGTAGCACTAGAATTCGTCCTTAAACCTGTCGAGCACAAGCGTCATAAGCCATATATAAGCAAAGGCACAAGCAAATGTGTTCTCCTCGCAGTAGTTACTGATCCAGtgtggaaacttttgtttttttaaagtctgtCATGCTTTGTTGTTTCCTTATTATCTAAAATGCTTCAGTCTTTTGTTTCTAAagctaattatatttttatattaaagtaaTGATTTTAAAGGAACTCATTTTACGACTCCCTTACAGTTAAACAGATTTAACATTTTTTGTATCCAGTCAGCAGATCTGGcagtagcacttttagcttagcttaccctgctgaaaaaaaaactgctggttttagctgtttaatcagcctggtttaagaggggtttggccatttccaggctggtttccagccatttccagcctggtcttggcTGATCAGACTGGAAAATGATCAGCTAAAacaagcttgaccagcctggtcaCTCTTGTTTTAGCTCGTCATCTGCCCACTATAACCCCTCTCAAACCAGGCTaatcgaccagctaaaaccagccaaccagcctgggctgttttaagctgtttttttttttcagcaggatagccaAGTCAGGTCAttgaatgagagtatagttcctagttaAATCGATCTAGAAAGTACCAACATCGGCTTTAGTACACAATTTACCAACAGAACAATcaagaaaaattattaaaactggtcatttttgagcgaggtgctaatggtctaatttatTTTGTTGGTCTATGCTAAGCTAGGCTAATAGTGCTCCCATCAGACccaaagatcagctgaatggatttaaaaatggtaaaacacaaCTGTTTGACACTACTTGAGCTTTCTTGAGCAAATTTGCATTTTGCGagaaagtggagtgttcctttaagaaatCAGGCAGTTGAGGATTAGACTTCAGCACGCTGCCATTTTAATGCAGACATTGCATTGCATCTTGTCCGTTTGTGTAGAATAAAAGAATCTAGTGTCATACTTTTTCTGTATCAGGAGAGCTAAGTATTCAGTTAGCATTCATTCAAACTGTGCTGTTTCTTGATAAAAAcacactaaaatgttattttaaaaaaaatatatcataaaCAATTATGCTACTTCAAGGGCAATGTATTACCGCCAGATTTAGATGATTTAAAACCATGAGCTGAACTTATGCACGCACAAGGGCATCATGACGGCCCAGACATAGCAGCTCTAGAGACCACTAGAAATTGATGTGATAATCGTCACTAGGCTGTGTGTGTTAAAGATGTAATATCTGGAACAACAATGTGAactgtatatacatgtgtgtgaagTATGTGATGTTCGCTGGACATGTAGAATGTAGCCTATTGGTTTTAACTTATTTCCGGTGTCGTTTTAGTAACGTCAGTTACATGGCTTTAATGCATATCGCTGTTGTTTTTCTTCATGAACTGTCATGTTGTTTTCCCCCTCATTTTAAACGAGTGTTTTAATGCTTGCACTCTACTCCACGGCTCTTTTCTTTAGTTTAAGTGCCTGACGGAGTTCGTTTCTCTTTGCCATCTCTCTCATCTTTTTGTCTGTATTGAGCTGAAGGGGGCGCTGCTGCACTCaagtttggtttgttttgttttctgatgGTTTTCAAAGATGTCTTTACTTTTTCctgttactgtatttttacaaataaactctATTTACTTCCAAATATGTAA

Function

GO:

id name namespace
GO:0009081 branched-chain amino acid metabolic process biological_process
GO:0009082 branched-chain amino acid biosynthetic process biological_process
GO:0009098 leucine biosynthetic process biological_process
GO:0009099 valine biosynthetic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0052654 L-leucine transaminase activity molecular_function
GO:0052655 L-valine transaminase activity molecular_function
GO:0052656 L-isoleucine transaminase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008483 transaminase activity molecular_function
GO:0004084 branched-chain-amino-acid transaminase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-425 Predicted to enable branched-chain-amino-acid transaminase activity. Predicted to be involved in leucine biosynthetic process and valine biosynthetic process. Predicted to act upstream of or within branched-chain amino acid biosynthetic process and cellular amino acid biosynthetic process. Predicted to be active in mitochondrion. Orthologous to human BCAT2 (branched chain amino acid transaminase 2).

Ensembl:

ensembl_id ENSDART00000077119

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051496 lncRNA downstream 23210 29923156 ~ 29926774 (-) True XLOC_026422
TCONS_00053045 lncRNA downstream 86378 29835165 ~ 29863606 (-) False XLOC_026415
TCONS_00053044 lncRNA downstream 86378 29835165 ~ 29863606 (-) True XLOC_026415
TCONS_00051475 lncRNA downstream 86380 29835165 ~ 29863604 (-) False XLOC_026415
TCONS_00051476 lncRNA downstream 86399 29835165 ~ 29863585 (-) False XLOC_026415
TCONS_00051501 lncRNA upstream 6453 29974468 ~ 29975528 (-) True XLOC_026424
TCONS_00053046 lncRNA upstream 26880 29994895 ~ 30004929 (-) True XLOC_026425
TCONS_00053047 lncRNA upstream 51821 30019836 ~ 30023485 (-) False XLOC_026426
TCONS_00051502 lncRNA upstream 54063 30022078 ~ 30023202 (-) True XLOC_026426
TCONS_00053048 lncRNA upstream 68682 30036697 ~ 30039149 (-) True XLOC_026427
TCONS_00051490 mRNA downstream 8627 29914427 ~ 29941357 (-) False XLOC_026422
TCONS_00051489 mRNA downstream 8627 29914427 ~ 29941357 (-) False XLOC_026422
TCONS_00051491 mRNA downstream 8627 29914428 ~ 29941357 (-) False XLOC_026422
TCONS_00051492 mRNA downstream 21269 29917358 ~ 29928715 (-) False XLOC_026422
TCONS_00051494 mRNA downstream 21289 29922236 ~ 29928695 (-) False XLOC_026422
TCONS_00051500 mRNA upstream 1128 29969143 ~ 29977495 (-) False XLOC_026424
TCONS_00051503 mRNA upstream 75996 30044011 ~ 30123113 (-) False XLOC_026428
TCONS_00051504 mRNA upstream 81910 30049925 ~ 30061985 (-) False XLOC_026428
TCONS_00051505 mRNA upstream 107645 30075660 ~ 30118856 (-) True XLOC_026428
TCONS_00051506 mRNA upstream 172565 30140580 ~ 30153242 (-) False XLOC_026429
TCONS_00051482 other downstream 79860 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 81252 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 82444 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051474 other downstream 179726 29770142 ~ 29770258 (-) True XLOC_026414
TCONS_00051472 other downstream 262221 29686709 ~ 29687763 (-) True XLOC_026412
TCONS_00051520 other upstream 486338 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051529 other upstream 832526 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051585 other upstream 2218119 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 3004959 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 3456177 33424192 ~ 33424328 (-) True XLOC_026505

Expression Profile

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