RNA id: TU2036122


Basic Information

Item Value
RNA id TU2036122
length 4154
RNA type TUCP
GC content 0.45
exon number 2
gene id G1778140
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 13168780 ~ 13172979 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGACTGGTGGAATGTGTGTCATTTTTCCTCACTTTCATTTCTTTCTGTTGTTGAATGTTTAACCATTTCAACGGTCTGGCCATCTCAAACTGCAAGGGGAGGGGCTACAGATACAGCCACCTGGAAACCTATCAAAACAGACTAAAGAAACCAGGGAGACAAATGAACAACGCAATCATAATACTGTGTTACTTAAAAACTGGacagaaatcaaatcaaaaacagaagaaaaaaaacgaatTCAATAAATATTTATGGTACACACTTATGGCACGAATATGCAGCAGTCGGTTTGGCAACtttttctcaatttttttttaaaaccaaatTTCCATGGAAACAGTGCAAAaggggagggagtgggaggacaCGGGGCTTTCCAACGAGCACTAGCTAAAATACATAGCAAAAAATTGAAATTTTATACAAAACATCTTACTTTAAgagtttataaaaaaaaaatgttttattgggtTCTTGTCAATATTTACACAAGCTATTTACCAAAAAAAGTAGTATGCTCTGTTTTACTGAAGTGTATTctgttttttcatttttttttcatttactTTCCTAAAAAGGTGAATAAGGCTATCGTAACAACCCAGGATCCATATACAATACAAACATTAATGTATTTACAGTTTCTTACCTACAGAAGAACGGTGCAAAATTACTGAGTCAGGTGACCAAGGGCTGACCAATACGAGCAAGGCATTTTACAGTAGCCTGAAGTACTTTTCCTAGCCAGGTTACTAACATTCTCTCAACATTGCCGCGATATTTCATCCATGTAGCAAGACAGAAAATCTACCCTAGTAATGTTAGGAGGATATCAGTTGTACGTTAGCTAGGATAAGGACATCAGATTCAAAGAAACTAATAAGATTGTCATATTCTGCCGCAGACAGACAGCAACTAAACAGCAATTTGTTTGTGATTCCTAGTGTTTTTCGCTATTTCTTAAATAACTGTCCAGGTGCATTTCATTTTGAAAATGTTTCTTTTTTCACAGTTTACCTTGGAACTACGGCACacagtaaaaaacaaacaaacaaaaaaaatacgtTTAAAATAATACTACAAATGAAAACCTAACAGCAGGCTCGTGTGACGTACTTTGCtagttttgttttgtttagtttGTTGTTACATCTCTCAGTGGTTTAAGAACACTTTCCATAGGTGTAGGTTTCTCTCAattcttaaaaaaataaagaaaaattgCATATTGCAGATTTTGTAGCCTCTTAGAGGCACAAACCTTGTATCATACAAGGCTTGGCTTTTTCGGTGAAATTTGATGTTCTTAATGAACTAATGAGAATGTTGGTAGTGAGCAGATACATGTTTGGGGTGTGGTCTAAGTCACAATCTAGTTCTCGTTTTCTTTAGTCAGTGTTTTCACGTATGTGAATAAACAGACAAATAGCTGTCTCACTGGACTTGCTCaagaagaggtacacacacacactctcacacacagagaaaacactATCACGTGGTAGTGAGGGGGAAGGGGGGCACAGGGTAATCGTGGGAATCTTCCCATGGTCCTTTGGGAGATGCTACAGTGGAGTGTGGGATATACTGCTGGTCAGCCTCGTGCACCCGGTTATGCTATTTTGGGTCCAAAAACCTCCTCTCCCCTTCGTGACATGCGTCCAGGCTGccctccctgtccccttcccaGGCCCTAGCCCTGAATATCTGGAAAAAAAGGCAGCCATTTGGGTGGGAGTTGATGAAAAGGTGGGACATTATGGGTGAAATAGATATCAAGTCATCAAAACCCTAGCTTGCATAATGTGCACTTTTATACCATAATATATTAACGTTAACTTCTCATTACCGCCTTTCTGACAACACCTGTGCTCTGTGTCTATCATAAATAGATTCTGCTTTTTTTTCAGTTGTTTTTTTGCCTTCCTTTTTGTGTTTTCAAATGTCCTCCTTTAAAATGTACACCTATTTTGTTACAAAAAATGATAATAATCAAAAACTCACAATAAGGAAATGCTAAAGATGATGCTTGAAAAACAGTGACAATGCGCTTTGATGTCCCTGTGCTTTTTAAAAGTTGAGAATGAGAGCACCAGTCCACCTGTTTGGGCCATTTGGGGGCCTCCGGGGCCCTTGCGGCAGCAAGACAATACAGTACCTAGAGCTGTTTTAGCCAGCGGCTGGGTTAAACTCAACTAGACCTGGGACTCTCTTATCTTTACCTTTCTTCAATGTCTCAGAAACTGCAGCAGTAAGCAGGTTGGGATATCTGATTGCCTGTACTTCCAGTTTAATTAACACCTCTTCATGTTGTAAAGTCCTATCTGTGGAAAATTCAAGCCAGCCCTCGCTACTGTGATCCCTTTACTGAAGggatacagtctctctctctctctctcactttctctcactctctctctctctctctctctcactcactcactcactcacactaccactgccactctctccctctctgtgactGACTGCCTGGGTGGAGGGATATCAGGGGGGTTAAAAGTGCTGCTCTATTGTTCGCTTAGCTCCCACACCCTTCCCAGAAGCCACCTGGCTAGCCCTGACCCCACAGAGGGGGTATAATGGGCACCCTATACCCTGACGGGGTGGAGCCCACATAAAACCCCTcatcttcttctccctctttaagtcctgctctctgctctcccaGTCCTGGGTTGCagggtgtttgtttgtgtgtgtgtgcgtgtgcgtgtgtgtgtgtgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcatacaCCACATACACCATCACGACATGAGCTGCGACAATACCAcatcacaaaaaatatatatatctgcaAGTTCAACAATACCAGCaatgaaaaacagaaatgaaCCAACAATATGACACTACGAAAAGGAATCATGTTCTTTTACAAACCTTTTTTTTTCAAGTAACAACTTTAATGAATCTTGACGCTAGAAAGTAAAAGGTGTCTTCGGACAATGAGGGAAAAGTGGGCTGTAACTAGTACGAGGACCTGAACAGTTCACAATGAGtgagagtgggtgagtgggtgggtgggtgggtggtaggGTGAGTGGGTGATGTCCTTGTGTCAGTCAGGAAAGTCCCAGAGTGGATATTTCCAAATCCCCcttgtttttttctccctcttccGTCATTTAATCCACAAAGTGTCTCTGGCCAATgaggagagggactgactgacattACTGACATGAGTTCATGGTCGGGCCCTTCCTTCCTTTTTCCTCTTCTAGTCTCTCTGCCatccctctcgttctccctcctgTGTCTCTTCCCCAGCAATAGTCTCTCTCAGGGAGAAAACCAGGGTAGGATATCgactcctcccccttctcctctttttctctccatctgtccatcctATTTCAAAACAAACGCGTGGGTgcgtctttctgtctctccgtccgtccgtccgtccgtccacacacaaacacacgcgctCGGATCCCCCAGCGTCAGTCGTAGTGCGCAAAGAAACAGAGGGCTACtgttagaggagaggagcagagaggagggatCCCCAAAAAGCcccagagagcagcagcagcttTACTCTGTAAGTTCTCCAATGAATCCCAACAATGAAGAATAATAACAGGAATAGTAAAGTTTAACAAGAAAAACAACAGAGATgtggggaaggaaggagagatagagcgTTCTGGGGGGGCGGTGCCTGGGGGGAAGGGGGGTGGAGCTGAGCTCAGACCTTGTAGTAGATGTTGGCAGGGCTCTGGGGGGGCATCTCCTGAACAATGTACACCGGGTGACCGTAGTCCCCGCTGACTTTCTCGTAGTGCGGGCAGAAGACGCTGTCTGCAGTCCTGAGCGGGATGATGATGTCACTGGGCTCCGAACCGTTGTTGTTGCCGCTGCCGCCCCGTTTGGGCGTGGCCAGTGTGCTGAGGGACAGCGCTGTGGCGTGCTGTGGCGAGTGCTTGCGGTGCCGCCGCCGGTActtgagcagcagcacgaccagcatgatgatgatgatgatgaagataacGCTGCCCGAGGCAATGCCGGCAAACAGGGCCACTTCGGAGCCGATGACACTTGAGGATTTCCCGCCCGTCCCTTGGTCGCCCTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2036143 lncRNA downstream 35299 13133069 ~ 13133481 (-) True G1778157
TU2036131 lncRNA downstream 55487 13113075 ~ 13113293 (-) True G1778145
TU2036117 lncRNA downstream 66204 13102374 ~ 13102576 (-) True G1778136
TU2036116 lncRNA downstream 67045 13101406 ~ 13101735 (-) True G1778135
TU2036115 lncRNA downstream 67528 13101050 ~ 13101252 (-) True G1778134
TU2036182 lncRNA upstream 57079 13230058 ~ 13280338 (-) True G1778196
TU2036240 lncRNA upstream 149834 13322813 ~ 13330358 (-) True G1778254
TU2036253 lncRNA upstream 163535 13336514 ~ 13336728 (-) True G1778267
TU2036273 lncRNA upstream 178217 13351196 ~ 13351483 (-) True G1778287
TU2036297 lncRNA upstream 193383 13366362 ~ 13366670 (-) True G1778311
XM_021578988.2 mRNA downstream 192935 12963389 ~ 12975845 (-) True LOC110501426
XM_021578989.2 mRNA downstream 202515 12963389 ~ 12966265 (-) False LOC110501426
XM_036958780.1 mRNA downstream 202619 12963389 ~ 12966161 (-) False LOC110501426
XM_021578987.2 mRNA downstream 216683 12942551 ~ 12952097 (-) True LOC110501425
LOC110502048 mRNA downstream 233433 12928202 ~ 12935347 (-) False LOC110502048
XR_002470293.2 mRNA upstream 665485 13838464 ~ 13843329 (-) True LOC110502113
XM_021578999.2 mRNA upstream 947828 14120807 ~ 14127458 (-) True nepro
XM_021579000.2 mRNA upstream 954612 14127591 ~ 14131604 (-) True tex30
XM_036958783.1 mRNA upstream 959180 14132159 ~ 14156704 (-) False poglut2
XM_036958784.1 mRNA upstream 959180 14132159 ~ 14156711 (-) True poglut2
TU2035584 other downstream 544086 12620582 ~ 12624694 (-) True LOC110501411
TU2035374 other downstream 898666 12268217 ~ 12270114 (-) True G1777441
TU2035206 other downstream 1127158 12041108 ~ 12041622 (-) True G1777286
TU2035106 other downstream 1325721 11841073 ~ 11843059 (-) True G1777196
TU2032076 other downstream 3430924 9735242 ~ 9737856 (-) True fundc1
TU2036210 other upstream 106301 13279280 ~ 13330495 (-) True G1778224
TU2039382 other upstream 2394524 15567503 ~ 15568534 (-) False G1781137
TU2039451 other upstream 2512877 15685856 ~ 15825214 (-) True b3galt1b
TU2041294 other upstream 3884143 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 3884143 17057122 ~ 17063385 (-) True LOC110501514

Expression Profile