RNA id: TU2037872


Basic Information

Item Value
RNA id TU2037872
length 1348
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1779807
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 14107240 ~ 14108618 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcattcagaaagtattcagaccccttcccttttccacatttttttacaccttattctaaaatcaattaaataaaaacatttcatcatcaatctacacagaatgacaaagtgaatttttttttgcaaacaatgacaaacagaaataccttatttacataacttattagaccctttgctattatactcgaaattgagctcaggtgcatcctgtttccactgatcacccttgagatgtttctacaacttgattggagtccacctgtggtcaattcaattggacatgatttggaaaggcgcacagctgtgtgtaaggtcccacagttgacagtgcatgtcagagcaaaaaccaaaccatgaggtcaaagaaattgtccgtagagctctgaaacaggattgtgtcgaggcacagatctggagaaggttaCCAAACAATGtctgaacacagtggcctccattattcttaaatggtaaaagtttggaaccaccaactctccccagagctggccgcccggcaaaactgagcaattgggggaaaacggccttggtcaaggagcttaccaagaacccgatggtcactctgacagagctccagaaatacaggtgtgctaaacttgtagcgtcatacccaaaaagaatcgaggctgcaatcgctgccaaaggggttTCAAAGTACTGGGTCTGAAAACCTAAGTAAATGTgagttacatttttttatttgtaataaatttgtcattattgggtattgtgtgtagattgaggtaaaaaaaaaaaactgaatcgATAGAATAagtttaacgtaacaaaatgtggaaaaagtcaaggggtctgaaaactttcagaATTCACGGTATATACAGAAATAGCAGTCTGACTATAGTAAACAATGTACACAAACACTAAAGGTGAAGCGGCTCTATTGGGAAACTGTCTTCAGGTCAGCTTTTAGTTTGTCTCTGTTCCCAAGGTGAAAGTTCCCGTAGAGTCACAGTACCGTGTCCATAAGAAAGCACTTACAGGGAGTGGATCAGATCTTAGATCGCTGTCTGCTTTGTTATAATGGTTTAGGGGTTAGAAAAGAAACACTGTAGCAGCACACGAACCAAGTATAGCAACTGATCTCAGGTCAGTTTTAAAATATGTCCACAATAGGCTACTGTATCAGTGGTGCGAGTGTTCATAGATTGGAATCATCTCATACTTCCTCAAACAAGTTATCAGCTGTGCTCCAGAGTGTGCAGTCAAAGAGAAGAGGTGGTTAACTGGTCTCAGATCAGCTTTGACAAGTGTCTCCCAGCTGAATGCTCCCGGTCACATGGGCAATGAAACAACGAAGCAGGTATATCCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2037864 lncRNA downstream 24338 14082635 ~ 14082902 (-) True G1779799
TU2037863 lncRNA downstream 27290 14079504 ~ 14079950 (-) True G1779798
TU2037752 lncRNA downstream 168660 13938147 ~ 13938580 (-) True G1779688
TU2037007 lncRNA downstream 221888 13885113 ~ 13885352 (-) True G1779000
TU2036639 lncRNA downstream 475742 13631280 ~ 13631498 (-) True G1778649
TU2037883 lncRNA upstream 9821 14118439 ~ 14118710 (-) True G1779818
TU2037949 lncRNA upstream 90160 14198778 ~ 14303481 (-) True G1779863
TU2037980 lncRNA upstream 142086 14250704 ~ 14251221 (-) True G1779894
TU2038085 lncRNA upstream 310588 14419206 ~ 14419417 (-) True G1779995
TU2038086 lncRNA upstream 312879 14421497 ~ 14421878 (-) True G1779996
XR_002470293.2 mRNA downstream 263911 13838464 ~ 13843329 (-) True LOC110502113
XM_021578988.2 mRNA downstream 1131395 12963389 ~ 12975845 (-) True LOC110501426
XM_021578989.2 mRNA downstream 1140975 12963389 ~ 12966265 (-) False LOC110501426
XM_036958780.1 mRNA downstream 1141079 12963389 ~ 12966161 (-) False LOC110501426
XM_021578987.2 mRNA downstream 1155143 12942551 ~ 12952097 (-) True LOC110501425
XM_021578999.2 mRNA upstream 12189 14120807 ~ 14127458 (-) True nepro
XM_021579000.2 mRNA upstream 18973 14127591 ~ 14131604 (-) True tex30
XM_036958783.1 mRNA upstream 23541 14132159 ~ 14156704 (-) False poglut2
XM_036958784.1 mRNA upstream 23541 14132159 ~ 14156711 (-) True poglut2
XM_036958785.1 mRNA upstream 48576 14157194 ~ 14392227 (-) False stxbp5l
TU2036210 other downstream 776745 13279280 ~ 13330495 (-) True G1778224
TU2036122 other downstream 934261 13168780 ~ 13172979 (-) False G1778140
TU2039382 other upstream 1458885 15567503 ~ 15568534 (-) False G1781137
TU2039451 other upstream 1577238 15685856 ~ 15825214 (-) True b3galt1b
TU2041294 other upstream 2948504 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 2948504 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 3760911 17869529 ~ 17903951 (-) False G1783895

Expression Profile