RNA id: TCONS_00051505


Basic Information

Item Value
RNA id TCONS_00051505
length 1845
RNA type mRNA
GC content 0.54
exon number 19
gene id XLOC_026428
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 30044011 ~ 30123113 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATGTGCGAGGTGATGCCCACCATCTCCGAGGACGGGCGGGGTGGTGCCCGCGGCGGAGATGAAGGAGGGAGCACTGGAAACCTGGAGTCTCTGATGGTGAACATGCTGACGGAGAGAGAGCGGCTGCTGGAGAGTCTCCGAGAGACCCAGGAGAGTCTCGGCACGGCACAGCTACGTCTGCGAGAGCTGGGTCACGAGAAGGACTCGCTACAGAGGCAACTCTCCATCGCACTGCCACAGgagTTTGCGGTGTTGACCAAAGAGCTGAATGTATGTCGGGAGCAGCTGCTGGAGAGAGAAGAGGAGATTGCTGAGCTCAAGGCAGAGAGGAACAACACACGGCTCCTGCTGGAGCATCTGGAGTGTCTGGTGTCCCGTCACGAGCGTTCTCTGAGGATGACTGTGGTGAAGAGACAGGCTCAGTCTCCTGCTGGAGTGTCCAGTGAGGTTGAGGTGCTCAAGGCGCTCAAGTCCCTGTTTGAACACCACAAAGCCCTGGATGAGAAGGTTCGTGAGAGATTGCGTGTGGCTTTAGAGAGAGTTGCCGTTCTAGAAGAAGAGCTTGAATCATCTACGAACGAGGTGAGTCACAACTATTTTGAATCTTGTTTCGAATgttttcactgtttttttttccctcatattgacagacagagagagggagagatagaGAGACAGAGAGCAGAGCTTTCACAGTTAAAAGAAAGACTGGCGCTCATGTGCAGACAGGTAAGTGTTATCGAGGAGCAGCTCACCACCGCCAGGAGGGAATTAGCTAAATCTGAGGAGGCCAATCAGAAGCTGCAGAGGGATGTGAAAGAGTCAAGTTCTCATCGAGAGAACTTCGAAACAACATCCAGAGACCCATcatgtgtgttttttgtgtgcagGTACCTCAGTGCCCAGAGGGAGGCAACCTCTCTCCATGACATCAAAGACAAACTGGAGAACGAGCTCGCCAGCAAAGAGTCTTTATACAGACAGAGTGAAGAGAAGAACCGGCAGCTTCAGGAGCGACTGGATGATGCCAAACAGAAGCTCCAGCAGACCCTCCAGAGGGCTGAGACGCTGCCCGAGATCGAGGCTCAGCTCGCCCAAAGGGTGGCGGCGCTCAATAAGGCGGAGGAGCGGCATGGCAACTTTGAGGAGAGACTGAGACAGCTGGAGGCGCAACTCGAGGAGAAGAACCAGGAGCTGCAGAGGGCAAGGCAGAGGGAGCGCATGAATGATGAACACAATAAACGTCTCTCCGACACGGTGGACAAGCTTCTGTCCGAGTCCAATGAGAGGCTTCAGCTGCACCTGAAGGAGAGAATGGCTGCCCTCGAGGAGAAGAACGCTCTTTCTGAGGAACTCGCTAACATGAAGAAGATCCAAGACGATCTCTTAGCAAACAAGGATCAACTAATTGCAGAGCTGGAGAGGCTTCAGCTAGAGCTGGACCAGCTGAGAGGAAGACCTGGATCCTCTTACTCACGATCTCTGCCAGGAAGTGCTCTAGAGCTGAGGTACTCTCAAGGAGGCGGGTCACTTCCTGCCGGGGGTGTGGTCAGACGGACTCACCGTGGACGCTGGAGTGGTGCCAGGGAGGATGCAAGCAAATATGGCGATTGGGAAAGCGGAGCGCTGCTGGGCTCTGGTTTCGAGGGCGGTGTGGAGGACAGGTGTTCTGATGATGAAGAGGACCGCGAGACGCTTTTCGGCTCGGAGCTGCTCTCACCGAGCGGCCAGACAGATGTGCAGACCCTCGCTATCATGTTGCAGGAGCAGCTGGAGGCCATCAACAAAGAAATAAAACAGAGAGACCTTGAGGACGACTTggaaaaacaaacttttatttaa

Function

GO:

id name namespace
GO:0007269 neurotransmitter secretion biological_process
GO:0050808 synapse organization biological_process
GO:0001944 vasculature development biological_process
GO:0048786 presynaptic active zone cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100311-3 Acts upstream of or within vasculature development. Predicted to be active in presynaptic active zone. Orthologous to human PPFIA3 (PTPRF interacting protein alpha 3).

Ensembl:

ensembl_id ENSDART00000109953

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053048 lncRNA downstream 36511 30036697 ~ 30039149 (-) True XLOC_026427
TCONS_00053047 lncRNA downstream 52175 30019836 ~ 30023485 (-) False XLOC_026426
TCONS_00051502 lncRNA downstream 52458 30022078 ~ 30023202 (-) True XLOC_026426
TCONS_00053046 lncRNA downstream 70731 29994895 ~ 30004929 (-) True XLOC_026425
TCONS_00051501 lncRNA downstream 100132 29974468 ~ 29975528 (-) True XLOC_026424
TCONS_00053049 lncRNA upstream 80180 30199036 ~ 30201831 (-) True XLOC_026432
TCONS_00051515 lncRNA upstream 128893 30247749 ~ 30248259 (-) True XLOC_026434
TCONS_00051527 lncRNA upstream 551649 30670505 ~ 30676028 (-) True XLOC_026438
TCONS_00053050 lncRNA upstream 576021 30694877 ~ 30696290 (-) True XLOC_026439
TCONS_00053051 lncRNA upstream 923096 31041952 ~ 31058290 (-) True XLOC_026446
TCONS_00051504 mRNA downstream 13675 30049925 ~ 30061985 (-) False XLOC_026428
TCONS_00051500 mRNA downstream 98165 29969143 ~ 29977495 (-) False XLOC_026424
TCONS_00051498 mRNA downstream 107605 29949987 ~ 29968055 (-) False XLOC_026423
TCONS_00051497 mRNA downstream 107645 29949984 ~ 29968015 (-) False XLOC_026423
TCONS_00051499 mRNA downstream 113315 29949991 ~ 29962345 (-) True XLOC_026423
TCONS_00051506 mRNA upstream 21724 30140580 ~ 30153242 (-) False XLOC_026429
TCONS_00051507 mRNA upstream 22468 30141324 ~ 30152836 (-) True XLOC_026429
TCONS_00051508 mRNA upstream 35110 30153966 ~ 30158395 (-) True XLOC_026430
TCONS_00051509 mRNA upstream 48090 30166946 ~ 30186298 (-) False XLOC_026431
TCONS_00051510 mRNA upstream 48541 30167397 ~ 30186296 (-) False XLOC_026431
TCONS_00051482 other downstream 205536 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 206928 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 208120 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051474 other downstream 305402 29770142 ~ 29770258 (-) True XLOC_026414
TCONS_00051472 other downstream 387897 29686709 ~ 29687763 (-) True XLOC_026412
TCONS_00051520 other upstream 335497 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051529 other upstream 681685 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051585 other upstream 2067278 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 2854118 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 3305336 33424192 ~ 33424328 (-) True XLOC_026505

Expression Profile

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