RNA id: TU2039444


Basic Information

Item Value
RNA id TU2039444
length 250
lncRNA type intronic
GC content 0.46
exon number 2
gene id G1781192
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15672223 ~ 15678026 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattgtcttgttggaagacaaatctctgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaacagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2039383 lncRNA downstream 103689 15567929 ~ 15568534 (-) True G1781137
TU2039350 lncRNA downstream 133601 15534033 ~ 15538622 (-) True G1781106
TU2039349 lncRNA downstream 137586 15534033 ~ 15534637 (-) False G1781106
TU2039261 lncRNA downstream 284253 15387764 ~ 15387970 (-) True G1781027
TU2039259 lncRNA downstream 285772 15385933 ~ 15386451 (-) True G1781025
TU2039456 lncRNA upstream 11763 15689789 ~ 15690167 (-) True G1781203
TU2039514 lncRNA upstream 106995 15785021 ~ 15796656 (-) True G1781260
TU2039741 lncRNA upstream 150473 15828499 ~ 15891725 (-) True G1781449
TU2039819 lncRNA upstream 285978 15964004 ~ 15965985 (-) True G1781526
TU2039860 lncRNA upstream 381950 16059976 ~ 16060205 (-) True G1781564
XM_036958847.1 mRNA downstream 26594 15623457 ~ 15645629 (-) True cers6
XM_021579081.2 mRNA downstream 26596 15623457 ~ 15645627 (-) False cers6
XM_036958846.1 mRNA downstream 53542 15614412 ~ 15618681 (-) True nostrin
XM_021579074.2 mRNA downstream 85826 15581319 ~ 15586397 (-) True dhrs9
XM_021579073.2 mRNA downstream 91264 15577071 ~ 15580959 (-) True rdh1
XM_036958849.1 mRNA upstream 6397 15684423 ~ 15699520 (-) False b3galt1b
XM_021579084.2 mRNA upstream 6397 15684423 ~ 15825221 (-) False b3galt1b
XM_021579085.2 mRNA upstream 158993 15837019 ~ 15859097 (-) False xirp2b
XM_036958851.1 mRNA upstream 158993 15837019 ~ 15859097 (-) False xirp2b
XM_036958852.1 mRNA upstream 158993 15837019 ~ 15859098 (-) False xirp2b
TU2039382 other downstream 103689 15567503 ~ 15568534 (-) False G1781137
TU2036210 other downstream 2341728 13279280 ~ 13330495 (-) True G1778224
TU2036122 other downstream 2499244 13168780 ~ 13172979 (-) False G1778140
TU2039451 other upstream 7830 15685856 ~ 15825214 (-) True b3galt1b
TU2041294 other upstream 1379096 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 1379096 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 2191503 17869529 ~ 17903951 (-) False G1783895
TU2042338 other upstream 2192102 17870128 ~ 17903951 (-) True G1783895

Expression Profile