RNA id: TU2039548


Basic Information

Item Value
RNA id TU2039548
length 1461
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G1781292
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15837013 ~ 15838727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACTATCCAATTCAATGATTTTATTGCCCTTGGATCAGCAATACATTTGAAAGAATTGTTGTTGAGTAACCAGCCTGACAGGATGAAAGAATCAGGAATTATCTTGTATAAAGCAAGGTAGTCTAATCTAAAGAATCTAATGTGCATTGCAAAATATTTGCTCTTTAAAATAGGATACAAATGTCCAAAACAAACAAGATTAACACCAATGAataggatatatactgtatatatatatatattaaaaaaaagtatttccaAGATAATTTTTACTAGGCTGCACACCAGGTGCTAGAAAAAGGTCAATGTAAAAATGTTGATACTGTATGTTGAAAGAAATAGCCAAGAGAAAATGATGACTGTGTTCGAAACCTTCAATGGTCTCTCCATGGACTTAAACTAATTgataaatataaatgtaacaaatTAAACTACATTACCCTAAAGATATTAGTCAAATATTTCTGAGACACATTGAACACATATTTTCGAGATCAAGTAAACATGAGTAATCTGAGTCAATTCCATGTGAAATCTGGAGCTAACGTCTTCAATGATCAATCTTGAATGACCAATGAGGGAGGCTGTGCCATTTCTAAGCATAACATTCCATGTTTCCATCTGTCATTCtactcctctttcactctgaccCTCAGTACTTTCCGATCCATCTTCTTCCACTCTCACACACCATAAATATATACACCATTTCTACCATTCATTCCCTTCGTATCAACTGCACTTGTCCTTTTGTCCTTCAGTCTCAGACTTTTCCCAATTCCAACTGTCTTTTTGCCCTCATAGGTTGCCTTACCATCGACTGCTTAAATTTTCTTCTGTTTCCTGTGGCATACATGATGGCGGTGGGAATGGTCTCTTTCAAAGAGAGCTCCTGGAAGTAGcttttctgtgttgttgtttgggtGACTTTGGGGAATTGTCCTGTGGAGGCCATTGTGGCTTAGTCATCTTTATGTCATCCTCTACTTTAAAGGCTTTCTGTGGGGAGTGCGCTTGTGGAGGCCACACAACAGACATCTTATTACAATTGAGTTTATTCTCGTCAATTGATTTCATAAATTCTTTTTCAAGGGTATCCTTTTCTGTTGAGCCTATGCTGCTCTGTGAATACCTCCAATCAAGTTGCTCTGATGAGGTGATGAGTCTGCCATTTTCATTGACATTCTTTTCATTGTGACGTGTCTGACCAAATCGATTATCGTAGTTCCCTTTGGACTTGAATAGTTGTTTGTAGTGCGGTAAACAGTACAGATGTCCATGGAGAGAGACATAGTTGCCAAGGCTAATTTATTTCTGCAGTACTCGCAGCAGAAACAAGATTTATGGAATTTTTTTCTGTCTGCTATTAGAGACTCCATCGGATAGACCCTCCTCCGACACACAGTGCAAAGCTCCGACTTGAGAACTCGAGTCTGCCAGAGAAAAGTGAACACCATTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2038818 lncRNA upstream 264043 15570282 ~ 15572970 (+) True lrp2a
TU2038809 lncRNA upstream 356008 15480346 ~ 15481005 (+) True G1780625
TU2038766 lncRNA upstream 391274 15444706 ~ 15445739 (+) True G1780585
TU2038765 lncRNA upstream 394843 15441928 ~ 15442170 (+) True G1780584
TU2038764 lncRNA upstream 395843 15440926 ~ 15441170 (+) True G1780583
TU2039560 lncRNA downstream 20726 15859453 ~ 15860977 (+) True LOC110501488
TU2039597 lncRNA downstream 114826 15953553 ~ 15972242 (+) True G1781333
TU2039630 lncRNA downstream 210126 16048853 ~ 16049113 (+) True G1781365
TU2039701 lncRNA downstream 211067 16049794 ~ 16050057 (+) True G1781415
TU2039702 lncRNA downstream 211336 16050063 ~ 16050759 (+) True G1781416
XM_021579082.2 mRNA upstream 153514 15647916 ~ 15683499 (+) False stk39
XM_021579083.2 mRNA upstream 153514 15647919 ~ 15683499 (+) True stk39
XM_036958848.1 mRNA upstream 171229 15647913 ~ 15665784 (+) False stk39
XM_021579079.2 mRNA upstream 222658 15610247 ~ 15614355 (+) False spc25
XM_021579080.2 mRNA upstream 222658 15610368 ~ 15614355 (+) True spc25
XR_002470215.2 mRNA downstream 20439 15859166 ~ 15861044 (+) False LOC110501488
XM_036958857.1 mRNA downstream 83655 15922382 ~ 15988118 (+) False csrnp3
XM_036958859.1 mRNA downstream 137846 15976573 ~ 15988118 (+) False csrnp3
XM_036958856.1 mRNA downstream 137848 15976575 ~ 15988118 (+) False csrnp3
XM_036958858.1 mRNA downstream 137858 15976585 ~ 15988118 (+) True csrnp3
TU2038754 other upstream 403193 15424711 ~ 15433820 (+) True G1780575
TU2038660 other upstream 489347 15291362 ~ 15347666 (+) True G1780491
TU2038500 other upstream 793370 15038099 ~ 15043643 (+) True G1780353
TU2037699 other upstream 933753 14902795 ~ 14903260 (+) True G1779636
TU2037181 other upstream 1757274 14079497 ~ 14079739 (+) True G1779170
TU2039549 other downstream 877 15839604 ~ 15848595 (+) False G1781293
TU2039550 other downstream 877 15839604 ~ 15848595 (+) True G1781293
TU2039714 other downstream 224030 16062757 ~ 16063401 (+) True G1781423
TU2040116 other downstream 433662 16272389 ~ 16273110 (+) True G1781813
TU2040736 other downstream 1167307 17006034 ~ 17041673 (+) True G1782390

Expression Profile