RNA id: TU2039597


Basic Information

Item Value
RNA id TU2039597
length 1959
lncRNA type read_through
GC content 0.36
exon number 2
gene id G1781333
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15953553 ~ 15972242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttgaccagggctcagaGGGCTGACTGAACACCGTCTTTAGAGAAGCTTTAGAATGGAGGGTAGTACAGAGCGGGACATTCCCCCAATGTTAATTTTGAGCAATACTTCTCTTTCTACAAAATATGATAAACCACACCTTAACTTTCCCTGCACATCTATCTGCCTTGTCATTTTTCCTTACCCAAGCTGGTTAGGAAACTTTTGAAAAGTAATGGGTGCGATTATGGAGAATTTCTATTGGTGCATTGCTTTTTATATTCCTTAAAACATTGTCAGGATTACTTGTGTTTGGCATGACTCCCATAGCACTCTGGCGTCTTTTATCAGTACCCACAATACTTACAATTGGCAGGAAAGTAACTTGAACTCTAGGTTACACCAGGTTTGACAGATTGCAAGGCAAACTTGATGGTAATTGTACATGAAGTGCAATTGATGGGACTTGCTTTAACTCATTAAAATTATTTTTGTGATAGTGGTAGAACTTTGAAAAGtgtaactttactatttaaagcAAAGCACTTACATATAGTCACGGTTGAATGTAGTAAAATAATTTGTCTGATTTACTTTGATAGACTACTATATCAACCATATTACTTTGGATTGTGAGTCAGTTAGatcacaaaaatgtctaaactacaGTTGTTGTGTGTGAAAATGAAAACAAGAATGACAAGACAAAGTGATCTTCTGTCATAAAATAGGAATAAAAGCGAGGATCATGTGGACAACACCTTTAGGAAAGCAAAGCAACTCTCATTCAAGCTGTGGGTTTCAGATCGATGCGCAACCTACTTTTGTAAAACGTTCAGTGTAAATGAAGTTTGATTTTAGTTGAATGATGATGTAATGATTCAAAAGTTTTAGGCTATTGAATGTTGACCTATTGATAGCTAGCTGTTGTTGTATCTAATAAATTCACTCTTCAGGCTAACAGTGATCACTGGAAAGtacatttcctgaagaaaatgtggTGTGTTGGCTAGCATGTTTTAAAGAATGTATGGTTTTGAAATACGTTATAGCAGTGGTAGTTTTTGCTGTGGTATTGGTGGTGACTGTTTATAGTTGACAAAGTAGGTAGATGAAAAGTTAGGACAGCCTGAACATATCAAAGTTGGTGCTGGTGTATCTAGCTTGAACAATTCAAAGGTTACTTTTGGTGAGTTTTATATTATGCAAATGTCTATCGTTTTAGTCTGAAAAAAAACTTGAACGTAGGATAGCCTGAACATTTGAATGTTGGTTTGGTGTCTTTAACTTCAATGCTTCAATAATTATTGTTGGTGAGTTATTTTAtgcacatttacagtgccttcagaaagtatccataccccttgacttaatccacattttgttgtgttacagcctgaattcaaaattgattacaaAAATGTTTTCTCacccatcaacacacaataccccgtaatgacatagtgaaaacatattgaaaataaatgacagaaacatctcatttccataattattcacacccctcaaTATTTTgcagaagcacctttgacagggattttagctgtgagtctttctggttaagtctcttAGAGCTTTTctcacctggattgtgcaaaagttgcccattattcttaaaaaaaaatcttcaagctctgtcaaattggttgctgatttttgctagacaaccatttccaggtcttgccatagattttcaagtagatttaagtcaaaactgtaactcggccactcaggaacattcactatcttcttggtaagcaactccagtgtagatttggccttgggtTTTAGGTTATCGTCCTGCTGAAAGATTATTTAATATCCCAGTGTCGGTTGAAAAGCacactgaaccaagttttcctctaagattctgcctgtgcttagctccattccgcttcctttttatcctgaaaaacttcccagttcttaacaattacaagcatacccataacatgatgcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2039560 lncRNA upstream 92576 15859453 ~ 15860977 (+) True LOC110501488
TU2039548 lncRNA upstream 114826 15837013 ~ 15838727 (+) True G1781292
TU2038818 lncRNA upstream 380583 15570282 ~ 15572970 (+) True lrp2a
TU2038809 lncRNA upstream 472548 15480346 ~ 15481005 (+) True G1780625
TU2038766 lncRNA upstream 507814 15444706 ~ 15445739 (+) True G1780585
TU2039630 lncRNA downstream 76611 16048853 ~ 16049113 (+) True G1781365
TU2039701 lncRNA downstream 77552 16049794 ~ 16050057 (+) True G1781415
TU2039702 lncRNA downstream 77821 16050063 ~ 16050759 (+) True G1781416
TU2039704 lncRNA downstream 80842 16053084 ~ 16053332 (+) True G1781417
TU2039706 lncRNA downstream 82704 16054946 ~ 16055968 (+) True G1781419
XR_002470215.2 mRNA upstream 92509 15859166 ~ 15861044 (+) False LOC110501488
XM_021579082.2 mRNA upstream 270054 15647916 ~ 15683499 (+) False stk39
XM_021579083.2 mRNA upstream 270054 15647919 ~ 15683499 (+) True stk39
XM_036958848.1 mRNA upstream 287769 15647913 ~ 15665784 (+) False stk39
XM_021579079.2 mRNA upstream 339198 15610247 ~ 15614355 (+) False spc25
XM_036958859.1 mRNA downstream 4331 15976573 ~ 15988118 (+) False csrnp3
XM_036958856.1 mRNA downstream 4333 15976575 ~ 15988118 (+) False csrnp3
XM_036958858.1 mRNA downstream 4343 15976585 ~ 15988118 (+) True csrnp3
XM_036958865.1 mRNA downstream 145944 16118186 ~ 16151990 (+) False LOC110501495
XM_036958864.1 mRNA downstream 146065 16118307 ~ 16151990 (+) False LOC110501495
TU2039549 other upstream 104958 15839604 ~ 15848595 (+) False G1781293
TU2039550 other upstream 104958 15839604 ~ 15848595 (+) True G1781293
TU2038754 other upstream 519733 15424711 ~ 15433820 (+) True G1780575
TU2038660 other upstream 605887 15291362 ~ 15347666 (+) True G1780491
TU2038500 other upstream 909910 15038099 ~ 15043643 (+) True G1780353
TU2039714 other downstream 90515 16062757 ~ 16063401 (+) True G1781423
TU2040116 other downstream 300147 16272389 ~ 16273110 (+) True G1781813
TU2040736 other downstream 1033792 17006034 ~ 17041673 (+) True G1782390
TU2041484 other downstream 1323711 17295953 ~ 17296359 (+) True G1783087
TU2042053 other downstream 1769515 17741757 ~ 17742435 (+) True G1783622

Expression Profile