RNA id: TU2039701


Basic Information

Item Value
RNA id TU2039701
length 264
lncRNA type intronic
GC content 0.52
exon number 1
gene id G1781415
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 16049794 ~ 16050057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accgacctctgcctgacctgaccatgACTGCCATCCTGTgcctttgcccctactctggattacctACCTCTGCCTGAagctgaccctgagcctgcctgccgtcctgtggctttgccactactctggattatcgacccctgcctgccttgacctgtcgtttgcctgcccccgtTGCTGTAATAATCAtagttacttcaacacagtctgcatttgggttttacctgaaacgtgatagttGGAAGAACTAACGACAAATGTTAGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2039630 lncRNA upstream 681 16048853 ~ 16049113 (+) True G1781365
TU2039597 lncRNA upstream 77552 15953553 ~ 15972242 (+) True G1781333
TU2039560 lncRNA upstream 188817 15859453 ~ 15860977 (+) True LOC110501488
TU2039548 lncRNA upstream 211067 15837013 ~ 15838727 (+) True G1781292
TU2038818 lncRNA upstream 476824 15570282 ~ 15572970 (+) True lrp2a
TU2039702 lncRNA downstream 6 16050063 ~ 16050759 (+) True G1781416
TU2039704 lncRNA downstream 3027 16053084 ~ 16053332 (+) True G1781417
TU2039706 lncRNA downstream 4889 16054946 ~ 16055968 (+) True G1781419
TU2039707 lncRNA downstream 5915 16055972 ~ 16056260 (+) True G1781420
TU2039713 lncRNA downstream 11324 16061381 ~ 16062047 (+) False G1781422
XM_036958857.1 mRNA upstream 61676 15922382 ~ 15988118 (+) False csrnp3
XM_036958859.1 mRNA upstream 61676 15976573 ~ 15988118 (+) False csrnp3
XM_036958856.1 mRNA upstream 61676 15976575 ~ 15988118 (+) False csrnp3
XM_036958858.1 mRNA upstream 61676 15976585 ~ 15988118 (+) True csrnp3
XR_002470215.2 mRNA upstream 188750 15859166 ~ 15861044 (+) False LOC110501488
XM_036958865.1 mRNA downstream 68129 16118186 ~ 16151990 (+) False LOC110501495
XM_036958864.1 mRNA downstream 68250 16118307 ~ 16151990 (+) False LOC110501495
XM_036958867.1 mRNA downstream 78070 16128127 ~ 16151990 (+) False LOC110501495
XM_036958866.1 mRNA downstream 84077 16134134 ~ 16151990 (+) True LOC110501495
XM_021579097.2 mRNA downstream 102182 16152239 ~ 16217207 (+) False LOC110501496
TU2039549 other upstream 201199 15839604 ~ 15848595 (+) False G1781293
TU2039550 other upstream 201199 15839604 ~ 15848595 (+) True G1781293
TU2038754 other upstream 615974 15424711 ~ 15433820 (+) True G1780575
TU2038660 other upstream 702128 15291362 ~ 15347666 (+) True G1780491
TU2038500 other upstream 1006151 15038099 ~ 15043643 (+) True G1780353
TU2039714 other downstream 12700 16062757 ~ 16063401 (+) True G1781423
TU2040116 other downstream 222332 16272389 ~ 16273110 (+) True G1781813
TU2040736 other downstream 955977 17006034 ~ 17041673 (+) True G1782390
TU2041484 other downstream 1245896 17295953 ~ 17296359 (+) True G1783087
TU2042053 other downstream 1691700 17741757 ~ 17742435 (+) True G1783622

Expression Profile