RNA id: TU2039706


Basic Information

Item Value
RNA id TU2039706
length 1023
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G1781419
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 16054946 ~ 16055968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAACATTGCCAGACTACATATATTTTGTGCAAGTGAAAAGGTCGTTTCAAAAGAAGACCTACGTCGACAATGAGGAAGTCCAGCCAGCACCAAGCGTTGGTGAAGTATTTGGCGAATCCATAGGCCACCCACTTCAGCAACATCTCCAGGATGAAGATGTGGGTGAAGACTTTGTCTGCAAACTCCAACACCGTCTTAATCGTCTTCCTCTTCTCGATGTAGATGTCCTCAAATGCCTTGATGTAAACACACTCAAATCAGATGATCCCGTCCTATACACCACAGTAATCTCACACTCTAGGGTAGTAGCTGCAGCCTCGTCAGATCTGTTGCCAGTTATTTCTGTGTCAAGCGATCACAGAATTGTCAATTACACAATACTGAGCCCGTTGAACAACAGAGCAGCTGCATGTGGTACTGCATTTCTACTCCTTTGTAGTTTTTCATAAGGGTCAGACAATGGAGGAGAATTTGCTGTCATTCGCTGAATTTGCTGTGAGCTGCTGTCagagctttgctttatcttggccaggtcgcagttgcaaatgagaacttgttctcaactggcctacctggttaaataaaggtgaaatcaaatgtaaaaaaaaatactttgccAGCCCCCTCTGCAATACTCTCAGATCCTTCCCCCGAATCTTTACTTCCCCACTTACCAGCGCTCCACTGCTGAGCAGGATCATGAAGATGATAAAGCTCTCAAACCAGTTGTGCTCCACTATCCTGAAACAAGTTTTTCTCAACGTCCACCACATCTTCCACTTGGCCTCATCAACGTTCACTTGGCAGCATTGGAATCTGCGGACACATCCTGAAAGCAGACAGCATGTAGGTTCATTGGAACAGATGTTACAATTCAACTTATTTTCTCCCCCAAAGAATGTGTGTCTTGTGTTTCTAGTTTCTGATCTTATCCATTCTATTTCTGGGTTCCAGCTTGTTATGCCTGAAGTTGTTATGTAAAAGACGATACCCACATCCTGAGACCTAGACTATTGTATCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2039704 lncRNA upstream 1614 16053084 ~ 16053332 (+) True G1781417
TU2039702 lncRNA upstream 4187 16050063 ~ 16050759 (+) True G1781416
TU2039701 lncRNA upstream 4889 16049794 ~ 16050057 (+) True G1781415
TU2039630 lncRNA upstream 5833 16048853 ~ 16049113 (+) True G1781365
TU2039597 lncRNA upstream 82704 15953553 ~ 15972242 (+) True G1781333
TU2039707 lncRNA downstream 4 16055972 ~ 16056260 (+) True G1781420
TU2039713 lncRNA downstream 5413 16061381 ~ 16062047 (+) False G1781422
TU2039711 lncRNA downstream 5593 16061561 ~ 16062047 (+) False G1781422
TU2039709 lncRNA downstream 6242 16062210 ~ 16062519 (+) False G1781422
TU2039710 lncRNA downstream 6242 16062210 ~ 16062481 (+) True G1781422
XM_036958857.1 mRNA upstream 66828 15922382 ~ 15988118 (+) False csrnp3
XM_036958859.1 mRNA upstream 66828 15976573 ~ 15988118 (+) False csrnp3
XM_036958856.1 mRNA upstream 66828 15976575 ~ 15988118 (+) False csrnp3
XM_036958858.1 mRNA upstream 66828 15976585 ~ 15988118 (+) True csrnp3
XR_002470215.2 mRNA upstream 193902 15859166 ~ 15861044 (+) False LOC110501488
XM_036958865.1 mRNA downstream 62218 16118186 ~ 16151990 (+) False LOC110501495
XM_036958864.1 mRNA downstream 62339 16118307 ~ 16151990 (+) False LOC110501495
XM_036958867.1 mRNA downstream 72159 16128127 ~ 16151990 (+) False LOC110501495
XM_036958866.1 mRNA downstream 78166 16134134 ~ 16151990 (+) True LOC110501495
XM_021579097.2 mRNA downstream 96271 16152239 ~ 16217207 (+) False LOC110501496
TU2039549 other upstream 206351 15839604 ~ 15848595 (+) False G1781293
TU2039550 other upstream 206351 15839604 ~ 15848595 (+) True G1781293
TU2038754 other upstream 621126 15424711 ~ 15433820 (+) True G1780575
TU2038660 other upstream 707280 15291362 ~ 15347666 (+) True G1780491
TU2038500 other upstream 1011303 15038099 ~ 15043643 (+) True G1780353
TU2039714 other downstream 6789 16062757 ~ 16063401 (+) True G1781423
TU2040116 other downstream 216421 16272389 ~ 16273110 (+) True G1781813
TU2040736 other downstream 950066 17006034 ~ 17041673 (+) True G1782390
TU2041484 other downstream 1239985 17295953 ~ 17296359 (+) True G1783087
TU2042053 other downstream 1685789 17741757 ~ 17742435 (+) True G1783622

Expression Profile