RNA id: TU2039714



Basic Information


Item Value
RNA id TU2039714
length 645
RNA type TUCP
GC content 0.43
exon number 1
gene id G1781423
representative True

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 16062757 ~ 16063401 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAATAAATGTATGGATCCAAAGCAATAATCTTGAAACACATCTCAGCTGTGAAGATACCCGTGAACACCTGAGTAAAACAACACACAAGAACAGTGACAACAGTAATTAACATGTCATGTGCTTAAAATGGCCGATTTTAAAGGGATTATGGCAAAAACAAATGACATGTGACTGCGTACCAGGTTTCCCACATAAAGCATGGTGTTGAACTCCCCAGACATTTGGTAATGCTCCATAGCCATGAACACTGTGTTCATAACAATACATATGGTGATAGCTAGGTCTACAAACGGGTCCATCACGATCATCTTGACTATTTTCTTGATCCTCAGCCACTTCGGACAACAGTCCCAGATGAGGAAGGTGTTGGCAAACTTGTACCAGCAAGGAGGGCACTTCTGTCTCGATTCTTCAAGTTCTGATACATACAGAGGAGAAATAACAGAAAAACATTTCTTTGATGACTGtgctctcattttgtctgttcaTGCTATTTGTTCTAGGGGGTGTATGGGGTATGGTATAGTCGTACACACCTTCCATAGTGTTGGTTATAACACTAGCTACACTGAGCGCCCTCTGCCTGGCAACTGGGTCTTCCAGGAAGTCCATAGTGGCCTGGTACGATCCATATCGGGCCTTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2039709 lncRNA upstream 238 16062210 ~ 16062519 (+) False G1781422
TU2039710 lncRNA upstream 276 16062210 ~ 16062481 (+) True G1781422
TU2039713 lncRNA upstream 710 16061381 ~ 16062047 (+) False G1781422
TU2039711 lncRNA upstream 710 16061561 ~ 16062047 (+) False G1781422
TU2039707 lncRNA upstream 6497 16055972 ~ 16056260 (+) True G1781420
TU2039715 lncRNA downstream 485 16063886 ~ 16064370 (+) True G1781424
TU2039716 lncRNA downstream 1732 16065133 ~ 16065426 (+) True G1781425
TU2039717 lncRNA downstream 3270 16066671 ~ 16067472 (+) True G1781426
TU2039722 lncRNA downstream 9051 16072452 ~ 16072853 (+) True G1781431
TU2039723 lncRNA downstream 9972 16073373 ~ 16073617 (+) True G1781432
XM_036958857.1 mRNA upstream 74639 15922382 ~ 15988118 (+) False csrnp3
XM_036958859.1 mRNA upstream 74639 15976573 ~ 15988118 (+) False csrnp3
XM_036958856.1 mRNA upstream 74639 15976575 ~ 15988118 (+) False csrnp3
XM_036958858.1 mRNA upstream 74639 15976585 ~ 15988118 (+) True csrnp3
XR_002470215.2 mRNA upstream 201713 15859166 ~ 15861044 (+) False LOC110501488
XM_036958865.1 mRNA downstream 54785 16118186 ~ 16151990 (+) False LOC110501495
XM_036958864.1 mRNA downstream 54906 16118307 ~ 16151990 (+) False LOC110501495
XM_036958867.1 mRNA downstream 64726 16128127 ~ 16151990 (+) False LOC110501495
XM_036958866.1 mRNA downstream 70733 16134134 ~ 16151990 (+) True LOC110501495
XM_021579097.2 mRNA downstream 88838 16152239 ~ 16217207 (+) False LOC110501496
TU2039549 other upstream 214162 15839604 ~ 15848595 (+) False G1781293
TU2039550 other upstream 214162 15839604 ~ 15848595 (+) True G1781293
TU2038754 other upstream 628937 15424711 ~ 15433820 (+) True G1780575
TU2038660 other upstream 715091 15291362 ~ 15347666 (+) True G1780491
TU2038500 other upstream 1019114 15038099 ~ 15043643 (+) True G1780353
TU2040116 other downstream 208988 16272389 ~ 16273110 (+) True G1781813
TU2040736 other downstream 942633 17006034 ~ 17041673 (+) True G1782390
TU2041484 other downstream 1232552 17295953 ~ 17296359 (+) True G1783087
TU2042053 other downstream 1678356 17741757 ~ 17742435 (+) True G1783622
TU2042125 other downstream 1846499 17909900 ~ 17911226 (+) True G1783691

Expression Profile