RNA id: TCONS_00051516


Basic Information

Item Value
RNA id TCONS_00051516
length 1875
RNA type mRNA
GC content 0.49
exon number 8
gene id XLOC_026435
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 30369765 ~ 30434016 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCACCTATGCTGTTGTTCTCCTcctatctctctgtctgtttcaTATTCATCCCTTTCTATTAAGCCTTCCTCATGCTTCTCTCTCTGGgagaaattattaatattaatgtatctCGCAGTGGGGGCCGCCTCCACCTGTCCTGCGGTGTGCAGCTGTTCCAATCAAGCTAGTCGAGTGATTTGCGCAAGACAACACTTAGAAGAGGTGCCCGACAATATATCGAACAACACACGATACCTCAACCTACAGGAGAACACCATACAGGTGATAAAATCAGACACATTCAAGCATTTGCGGCATCTGGAGATCCTCCAGCTCTCCAAGAACCAGATTCGACAGATAGAGGTTGGTGCATTCAATGGCCTTCCAAACCTCAACACTCTGGAACTGTTTGACAACCGCCTCACGCTGGTGCCATCGCAAGCTTTTGAGTACCTTAGCAAGCTGCGGGAACTGTGGTTACGAAACAATCCCATCGAGACCTTACCAGGCTACGCATTTCACCGCGTTCCCTCGCTGCGGCGTCTTGACCTCGGAGAACTCAAGAAGCTGGATTATATATCTGACGCAGCCTTTGTTGGACTCATCAATCTGCGCTACCTGAACTTGGGTATGTGTGGCCTGAAGGACATCCCTAACTTGACTCCCCTGGTGCGACTGGAGGAGCTAGAGTTGTCTGGGAACAGACTGGAAATCATCAGACCAGGATCTTTCCAAGGCCTGGAATCTTTGCGCAAGCTATGGCTCATGCACTCTCAGATGTCAGTCATTGAGCGTAATGCTTTCGATGATCTCAAGAATCTTGAGGAGCTCAACTTATCTCACAATTCCCTGCACTCTTTGCCCCATGACCTTTTCACTCCACTTCAAAAGCTGGAGCGAGTGCACCTTAACCACAACCCATGGGTTTGCAACTGCGATGTGCTGTGGCTAAGCTGGTGGCTAAAAGAAACTGTGCCGAGCAACACAACTTGTTGTGCACGATGCCATGCACCCCCCTACCTGAAGGGAAAATACATTGGGGAATTGGACCAGAGCCATTTCACTTGCTATGCCCCTGTCATTGTGGAGCCACCCACCGACCTCAATGTAACGGAGGGCATGGCTGCCGAGCTCAAGTGTCGCACTGGTACGTCTATGACCTCTGTGAATTGGATCACACCAAATGGCACCCTAATGACCCATGGCTCCTATCGTGTCAGGATTTCAGTGCTGCATGATGGCACATTGAATTTCACCAATGTTACACTGCGTGACACTGGACAATACACCTGCATGGTGACCAACTCAGCTGGGAACACTACGGCAACTGCTGTCCTGAATGTGACCGCAGCAGACGTTAGTGTCAACTACACCTACTTCACCACAGTCACAGTAGAAACAGAAGATTCTGCCTTGCGTACCTTTAACGAGACTTTCATCCATATTCCTGGTCCGACCCCTTCTGGGCATCTCTGGCATGAAGTTGTTCCCACAACTGCCTCTTCTCTCTCAATCTTTGCAACCAAACCCACATTCACAGTCCCCATTTCTGAGCCCAGTTACCCCTCTGGACTGGATGACGTGATGAAAACGACCAAGATCATCATTGGTTGTTTTGTGGCCATTACCTTCATGGCTGCTGTCATGTTGGTGGTGTTCTACAAGCTGAGAAAGCAGCACCAGTTGCACAAACATCATGGGCCGGCACGAGCCATTGAAATCATTAATGTTGAAGATGAGATTGGAGCTGGAACGGTACCCCAAATAGGGTCTGGAGGAGCAGACCATCTTAATCATTACTACAAGCCCCATCACTTCAACAATAACATGATGGGTCTGGCACACTGCATATCAATAAAGCTCCTTAACGTTGACATTCATGAACCTTGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080327-25 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in basal plate midbrain region and nervous system. Orthologous to human LRRC4B (leucine rich repeat containing 4B).

Ensembl:

ensembl_id ENSDART00000183790

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051515 lncRNA downstream 121506 30247749 ~ 30248259 (-) True XLOC_026434
TCONS_00053049 lncRNA downstream 167934 30199036 ~ 30201831 (-) True XLOC_026432
TCONS_00053048 lncRNA downstream 330616 30036697 ~ 30039149 (-) True XLOC_026427
TCONS_00053047 lncRNA downstream 346280 30019836 ~ 30023485 (-) False XLOC_026426
TCONS_00051502 lncRNA downstream 346563 30022078 ~ 30023202 (-) True XLOC_026426
TCONS_00051527 lncRNA upstream 281980 30670505 ~ 30676028 (-) True XLOC_026438
TCONS_00053050 lncRNA upstream 306352 30694877 ~ 30696290 (-) True XLOC_026439
TCONS_00053051 lncRNA upstream 653427 31041952 ~ 31058290 (-) True XLOC_026446
TCONS_00051546 lncRNA upstream 692155 31080680 ~ 31082367 (-) False XLOC_026449
TCONS_00053052 lncRNA upstream 704687 31093212 ~ 31093764 (-) True XLOC_026450
TCONS_00051514 mRNA downstream 121464 30241237 ~ 30248301 (-) False XLOC_026434
TCONS_00051513 mRNA downstream 121488 30241237 ~ 30248277 (-) False XLOC_026434
TCONS_00051512 mRNA downstream 151261 30202863 ~ 30218504 (-) True XLOC_026433
TCONS_00051509 mRNA downstream 183467 30166946 ~ 30186298 (-) False XLOC_026431
TCONS_00051510 mRNA downstream 183469 30167397 ~ 30186296 (-) False XLOC_026431
TCONS_00051519 mRNA upstream 65828 30454353 ~ 30488063 (-) False XLOC_026436
TCONS_00051521 mRNA upstream 95823 30484348 ~ 30488100 (-) True XLOC_026436
TCONS_00051522 mRNA upstream 126840 30515365 ~ 30625219 (-) False XLOC_026437
TCONS_00051525 mRNA upstream 141102 30529627 ~ 30609659 (-) False XLOC_026437
TCONS_00051524 mRNA upstream 141102 30529627 ~ 30609659 (-) False XLOC_026437
TCONS_00051482 other downstream 499641 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 501033 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 502225 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051474 other downstream 599507 29770142 ~ 29770258 (-) True XLOC_026414
TCONS_00051472 other downstream 682002 29686709 ~ 29687763 (-) True XLOC_026412
TCONS_00051520 other upstream 65828 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051529 other upstream 412016 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051585 other upstream 1797609 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 2584449 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 3035667 33424192 ~ 33424328 (-) True XLOC_026505

Expression Profile

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