RNA id: TCONS_00051520


Basic Information

Item Value
RNA id TCONS_00051520
length 1954
RNA type nonsense_mediated_decay
GC content 0.47
exon number 15
gene id XLOC_026436
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 30454353 ~ 30488100 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAACCAGACCGTACTGTCGATTGCCGAGCCAAAAATCCCGATGTTTGTTGTCATTACGCTCTACATTTACTTTCAGATGAAGCTTTAATACACAATAAAACTACCAGGGGCTGGTTCGGATATAATCAAGATAAATGACTGAACCGGTTTGTTTTATTCACAGTAAAAGCCAGTTCTACTAATTCTAGCAGACCAAAGGTGACCCATATGGACCCCACGTCCAAATCTGGGTTGAATCAGGTGTCAGATGTGGTGTTTGTCATTGAAGGAACTGCAAACCTTGGTCCATATTTTGAATCACTTCGGAATAATTACATACTGCCTACTATAGAgtATTTTAATGGAGGACCACCGGCTGAAACTGATTTTGGAGGAGATtATGGTGGCACTCAGTATGGACTGGTGGTATTCAACACAGTGGATTGTGCTCCAGAGTCATATGTCCAGTGCCATGCTCCAACCAGCTCTGCCTTCGAGTTTGTGTCTTGGATTGACAGCATTCAGTTCATGGGAGGTGGAGCAGAGAGCTGCAGTCTTATAGCTGAGGGTCTTTCTGTGGCCCTGCAGCTCTTTGACGACTTCAAAAAGATGAGGGAGCAAATTGGTCAGACCCACAAGGTGTTGCCAACAAGGTTGTGGCATGGAGTGGAGTTCTAGAATGGCAGGAGAAGCCCAAGGCCTCCTCCATGGACTCCAACACAAAACTTACACGCTCCCTGCCCTGCCAGGTCCAAGTCAGCCAAGGAGAGAATCTAAACACAGACCAGTGGCCACAGAAGCTGATCATGCAGCTCATCCCTCAACAGCTCCTGACCACTCTAGGCCCTCTGTTCAGGAACTCTCGTATGGTGCAGTTTCTGTTCACTAACAAAGATATGGAGTCTTTAAAAGGACTGTTTCGTATTATGACCAGTGGATTTGCTGGATGTGTGCACTTCCCCCACAGTGCTCCGTGTGAGGTGCGTGTGCTGATGCTGCTGTACTCATCTAGGAAGAGGATCTTCATGGGACTCATTCCTAATGACCAGAGTGGATTCGTCAACGGCATTCGGCAGGTCATCACTAACCATAAACAAGTGCAACAGCAACGCTCGATGCAACCTGGACAGGTGCAGCCCAATCAGAACTTCCTCAACAGACCGCCGGGCCCCATTCCTGTTACACATGGCAACGTGCCACAGCAGCTGAGAGCAGCCGCAACAGGCAATCAGCAGGCGCCGGTCACTGGTGCTCCACCCAATCAGGTCCAAGGTCAAGCTCAGGCTCCTGGTGGAGGCATGCTCCGCCTCCAGAACCCAGGCGCAAACCCCCAGCTCCGCAGTCTGCTCCTCAGCCAGCAACCTCAGGGTGGTATGCAAGGCATGCAGGGGATGCATCCTATCCAGCAGATGGTCCATGCAGCACCAGGAGGGGGCGCTCAGATGCAGCCTCAGTGGAGACAGCCTCACCAGGGTCCACTAATGGTCCCGACGGGTCCACGTGGTCCAGTCACACAGAATCCAGGGATGCCTTCGGTGTCGAGCGTCATGGAGGATGAAATTCTTATGGATCTAATCTAAGGACTGTTTTCCCATCATTCTTTGCTTCAGAGGTTTAATTACGGAATATGAAAGTCATcatcttttttactttttgttagaAGAAAGCGTGTAGGGGAAGAAGGACTTTATTTTCATACTCAAGTATTCGTTGATGCTTTTACACACAAACTTATCACCGTATCATGTAAGCGGTTCATATGGAGGAACTGGAGGAAAAGACATTTACAAAAAATTAGGTTCCACTTTGAAGACTCAACTACTCCTCCCattcataaatgaatgaatcaaatccggttactactgtatttttatgagcattttaCTTTCTTTcggttttactttttttattatttgtctttGAGATCTAGCATGttgttttatgaaaattaaataaagttaattttcTCAAGCA

Function

GO:

id name namespace
GO:0060021 roof of mouth development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-040426-2850 Acts upstream of or within roof of mouth development. Predicted to be located in nucleus. Predicted to be part of mediator complex and transcription regulator complex. Is expressed in head; post-vent region; and trunk. Orthologous to several human genes including MED25 (mediator complex subunit 25).

Ensembl:

ensembl_id ENSDART00000151058

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051515 lncRNA downstream 206094 30247749 ~ 30248259 (-) True XLOC_026434
TCONS_00053049 lncRNA downstream 252522 30199036 ~ 30201831 (-) True XLOC_026432
TCONS_00053048 lncRNA downstream 415204 30036697 ~ 30039149 (-) True XLOC_026427
TCONS_00053047 lncRNA downstream 430868 30019836 ~ 30023485 (-) False XLOC_026426
TCONS_00051502 lncRNA downstream 431151 30022078 ~ 30023202 (-) True XLOC_026426
TCONS_00051527 lncRNA upstream 182411 30670505 ~ 30676028 (-) True XLOC_026438
TCONS_00053050 lncRNA upstream 206783 30694877 ~ 30696290 (-) True XLOC_026439
TCONS_00053051 lncRNA upstream 553858 31041952 ~ 31058290 (-) True XLOC_026446
TCONS_00051546 lncRNA upstream 592586 31080680 ~ 31082367 (-) False XLOC_026449
TCONS_00053052 lncRNA upstream 605118 31093212 ~ 31093764 (-) True XLOC_026450
TCONS_00051517 mRNA downstream 20337 30370708 ~ 30434016 (-) False XLOC_026435
TCONS_00051516 mRNA downstream 65828 30369765 ~ 30388525 (-) False XLOC_026435
TCONS_00051518 mRNA downstream 70000 30372710 ~ 30384353 (-) True XLOC_026435
TCONS_00051514 mRNA downstream 206052 30241237 ~ 30248301 (-) False XLOC_026434
TCONS_00051513 mRNA downstream 206076 30241237 ~ 30248277 (-) False XLOC_026434
TCONS_00051522 mRNA upstream 27271 30515365 ~ 30625219 (-) False XLOC_026437
TCONS_00051525 mRNA upstream 41533 30529627 ~ 30609659 (-) False XLOC_026437
TCONS_00051524 mRNA upstream 41533 30529627 ~ 30609659 (-) False XLOC_026437
TCONS_00051523 mRNA upstream 41533 30529627 ~ 30609659 (-) True XLOC_026437
TCONS_00051526 mRNA upstream 177101 30665195 ~ 30685401 (-) False XLOC_026438
TCONS_00051482 other downstream 584229 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 585621 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 586813 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051474 other downstream 684095 29770142 ~ 29770258 (-) True XLOC_026414
TCONS_00051472 other downstream 766590 29686709 ~ 29687763 (-) True XLOC_026412
TCONS_00051529 other upstream 312447 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051585 other upstream 1698040 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 2484880 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 2936098 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 3460575 33948669 ~ 33948788 (-) True XLOC_026513

Expression Profile

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