RNA id: TU2040896


Basic Information

Item Value
RNA id TU2040896
length 2727
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G1782532
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 17232881 ~ 17235607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcaaaagggggtgcaaaacaatattaggaagctgttcttaatgttttgtacactcagtgtacatggaTGTTATAACCATAAGCTGATTGGGCTACGTGTCAGTGCAAAGTTCAGATAAATATTGCTGGCCTATTTTTGCAATCCTTTAGTGTCTCATCTCCATTTTGAAGCTAGTCATTTCTTAATAATCCATGTTGAATAAGAGGATGTGGACCCATATCAGCCAGGCCTGAACTGAATTTATTCCGGATTTAAAAATGTCAGGTACAATGAAGTCAGAGATGCATTTCAATTTCTATTTATAGTTCCGCTACGCCAGTGCCTAACTCCTGAGCCATGAGCCATTTGATTAAATTACAGTCAGAAGAGAGCATCTTTCTCTAAATCcttattacatttttaaaaaggcataGGACTTAATGTCATCgggtatactgaacaaaatgagaaacgcaacatgcaacaatttcaaagattttactgagttacaattcctGTAactaaatcagtcaattgaaataaattcattaggcccaaatctatggatttcccgtgactgggaatacagatatgcatctgttggtcacagataccttagaaaaaaaggtaggggtgttaatcagaaaaccagtcagtatctcgTGTGACCACCATTTCTCTCATGTAGCGCGACACATTTCCTTCGCATAGTTGATCAGGCTTCTGATtgcggcctgtggaatgttgtcccactcctcttcaatggctgtgcaaagatGCTGGaaattggcgggaactggaacacgctgtcgtacacgtcaatcctgagcattccaaacatgctcaacgggtgacatatctggtgaggacgtgggccatggaagaactgggacattttcagacccaggaattgtgtacagatccttgcaacatggggctgtgcattatcatgctgaaacatgaggtgatggcagcagataaatggcacgacaatggacctcaggatctcatcatggtatctctgtccattcaaattgccatcgataaaatgcaattgtgttcattgtccgtagtttatgcctgccgaTAACATatccccaccatggggcactctgttcacaacgctgacatcagcaaaccattcacccacacaatgccatacatgtGGCCTGCGGTTGAGGCCGGTTGAACATACTGACATTGGAGGCGGTATATGGTAGATAAAACATTTAATTGTGGCAATAGCTCTGgctgacattcctgcagtcagcatgccaattgcacgctccctcaaaacgtgcgatatctgtggcattgtgttgtgtgacaaaactgcacattttagtgggcttttattgtccccagcacaaggtgcacctatgctGTTCAttcagcttcttgaaatgccgCATCAGTTggctggatggattatcttggcaaaggagaaatgctcactaacagggatgtaatcaaatttgtgacaaaaaaaattagagaaataagctttttgtgcatatagatcatttctgggatctttacaGGTTGCGTTTATCTTTCTGTTCCGTGTAGTTACAGAGAAACCAACAATTTCATCTACACAGTCAAGGTAGTCAAAAGCAacacaatatatacagttgaagtcggaagtttacatacacttaggttggagttattaaaactcgtttttcaaccactccacacatttcttgttaacaaactatagctttggcaagtcggttaagacatctactttgtgcatgacacaggtaattttttcaacaattgtttacatacagattatttaatttataattcactgtatcacaattccagtgggtcagaagtttacatacactaagttgactgtgcctttaaacagcttggaaaactccagaaaattatgtcatggctttagaagcttctgataggctaatgacatcctttgagtcaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaaaatcagccaagacctcagaaaataaattgtagacctccacaagtctggttcatccttgggagcaatttccaaatgcctgaaggtactatgttcatctgaacaaacaatagtacacaagtataaactcagcaaggaagaaacaaggaagaagccactgctccaaaatcggtgtatgtaaacttccgacttcaactgcaataCCATTACAAATATACCACACAATTGCGTATGAGCCCACTCTTTGAGCTTCATTTAACAAATCATACACGATACAACACATCTGTCAAATCTTCATGTACTTTTAGAACACTTTAAATAATATCTTAACATATCAACATGACTgtatacatacactgagtgtacaaaacattaagaacacctgctctttccatgacagtctgatcaggtgaaagctatgatcccttattgatgtcacctgttaaatccacttcagtcagggGCAAAAGGGGTGAAACTCAATAGGAaggagttcctaatgttttctacactccgTGTATGTCCACGTAACAGTCGAGGCTGTAGCTATGTGCAGTTCATGGGCAGCAGATGTGATCGGAGGGAGCTTTAGACGACGAGGCCCAGGCGTTTCTTGATGAAGTGGGCCACCAGAACCTGAGGTCTCTGTTGGTACTCCACTAGCACATCATGAGGGGTGGAGATCTGATCCCCATCGAAACGGTTCAACAAAGT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2040892 lncRNA upstream 2127 17230371 ~ 17230754 (+) True G1782529
TU2040843 lncRNA upstream 61710 17170953 ~ 17171171 (+) True G1782491
TU2040839 lncRNA upstream 67618 17165030 ~ 17165263 (+) True G1782487
TU2040835 lncRNA upstream 75934 17156328 ~ 17156947 (+) True G1782483
TU2040832 lncRNA upstream 78443 17153300 ~ 17154438 (+) True G1782481
TU2040894 lncRNA downstream 5593 17241200 ~ 17242745 (+) True G1782530
TU2041492 lncRNA downstream 82979 17318586 ~ 17324714 (+) True G1783090
TU2041522 lncRNA downstream 122413 17358020 ~ 17358256 (+) True G1783120
TU2041591 lncRNA downstream 143148 17378755 ~ 17379020 (+) True G1783186
TU2041593 lncRNA downstream 143988 17379595 ~ 17379804 (+) True G1783188
XM_036958887.1 mRNA upstream 6825 17178459 ~ 17226056 (+) True LOC110501515
XM_036959581.1 mRNA upstream 368495 16846918 ~ 16864386 (+) True LOC110502058
XR_002470219.2 mRNA upstream 378177 16853656 ~ 16854704 (+) True LOC110501510
XM_021579142.2 mRNA upstream 388681 16754323 ~ 16844200 (+) False LOC110501507
XM_021579157.2 mRNA downstream 20273 17255880 ~ 17290932 (+) False LOC110501518
XM_021579159.2 mRNA downstream 20439 17256046 ~ 17290932 (+) False LOC110501518
XM_021579160.2 mRNA downstream 20439 17256046 ~ 17290932 (+) False LOC110501518
XM_036958889.1 mRNA downstream 20439 17256046 ~ 17290932 (+) False LOC110501518
XM_036958891.1 mRNA downstream 25593 17261200 ~ 17290932 (+) False LOC110501518
TU2040736 other upstream 191208 17006034 ~ 17041673 (+) True G1782390
TU2040116 other upstream 959771 16272389 ~ 16273110 (+) True G1781813
TU2039714 other upstream 1169480 16062757 ~ 16063401 (+) True G1781423
TU2039549 other upstream 1384286 15839604 ~ 15848595 (+) False G1781293
TU2041484 other downstream 60346 17295953 ~ 17296359 (+) True G1783087
TU2042053 other downstream 506150 17741757 ~ 17742435 (+) True G1783622
TU2042125 other downstream 674293 17909900 ~ 17911226 (+) True G1783691
TU2042522 other downstream 866324 18101931 ~ 18222726 (+) True kalrna
TU2042946 other downstream 1530712 18766319 ~ 18767140 (+) False G1784476

Expression Profile