RNA id: TU2043211


Basic Information

Item Value
RNA id TU2043211
length 542
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1784734
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 18217992 ~ 18228343 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgggcgtgcaaaattattcagcccccttaagttaatattttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgaatttttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggttctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2043108 lncRNA downstream 164308 18053394 ~ 18053684 (-) True G1784633
TU2043087 lncRNA downstream 206062 18009924 ~ 18011930 (-) True LOC110501531
TU2042349 lncRNA downstream 396421 17818656 ~ 17821571 (-) True G1783903
TU2041940 lncRNA downstream 605591 17611203 ~ 17612401 (-) True G1783513
TU2041832 lncRNA downstream 664172 17553552 ~ 17553820 (-) True G1783410
TU2043219 lncRNA upstream 3249 18231592 ~ 18231848 (-) True G1784742
TU2043306 lncRNA upstream 130221 18358564 ~ 18359224 (-) True G1784829
TU2043438 lncRNA upstream 288644 18516987 ~ 18517393 (-) True G1784940
TU2043565 lncRNA upstream 490958 18719301 ~ 18719533 (-) True G1785062
TU2043569 lncRNA upstream 494167 18722510 ~ 18722841 (-) True G1785066
XM_036959577.1 mRNA downstream 117273 18098805 ~ 18100719 (-) True LOC110502115
XM_021579175.2 mRNA downstream 130036 18009923 ~ 18087956 (-) False LOC110501531
XM_036958908.1 mRNA downstream 130036 18009923 ~ 18087956 (-) False LOC110501531
XM_036958900.1 mRNA downstream 222178 17906058 ~ 17995814 (-) False fmnl2a
XM_036958903.1 mRNA downstream 222178 17906058 ~ 17995814 (-) False fmnl2a
LOC110502060 mRNA upstream 198799 18427142 ~ 18428030 (-) True LOC110502060
XM_021579180.2 mRNA upstream 279660 18508003 ~ 18526067 (-) True wnt10a
XM_021579181.2 mRNA upstream 305253 18533596 ~ 18569048 (-) True LOC101268914
XM_021579184.2 mRNA upstream 389183 18617526 ~ 18767708 (-) False LOC110501539
XM_021579185.2 mRNA upstream 389183 18617526 ~ 18767708 (-) False LOC110501539
TU2042341 other downstream 314041 17869529 ~ 17903951 (-) False G1783895
TU2042338 other downstream 314041 17870128 ~ 17903951 (-) True G1783895
TU2041294 other downstream 1154544 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other downstream 1154607 17057122 ~ 17063385 (-) True LOC110501514
TU2039451 other downstream 2392778 15685856 ~ 15825214 (-) True b3galt1b
TU2044261 other upstream 947224 19175567 ~ 19177740 (-) False LOC110501547
TU2044262 other upstream 947224 19175567 ~ 19179184 (-) True LOC110501547
TU2044318 other upstream 1092845 19321188 ~ 19321859 (-) True G1785753
TU2044972 other upstream 1427939 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 2117356 20345699 ~ 20346014 (-) True G1786832

Expression Profile