RNA id: TU2043219


Basic Information

Item Value
RNA id TU2043219
length 257
lncRNA type intronic
GC content 0.37
exon number 1
gene id G1784742
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 18231592 ~ 18231848 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaccggtgtctgtacgAAGCCTCAcaacttttatagcctcgctgtatatagcctggctttttactgttgttttatttctttacttacctattgttcacctaataccttttttgcactgttggttagagcctgtcagtaagcatttcactgtaatgctgttgtatttggcgcacgtgacaaattaaCTTGGATTTGATTTATTCATACATAGAGATGAATGAATCGAAGTGGACAAACAAATGAAGAAATCTAGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2043211 lncRNA downstream 3249 18217992 ~ 18228343 (-) True G1784734
TU2043108 lncRNA downstream 177908 18053394 ~ 18053684 (-) True G1784633
TU2043087 lncRNA downstream 219662 18009924 ~ 18011930 (-) True LOC110501531
TU2042349 lncRNA downstream 410021 17818656 ~ 17821571 (-) True G1783903
TU2041940 lncRNA downstream 619191 17611203 ~ 17612401 (-) True G1783513
TU2043306 lncRNA upstream 126716 18358564 ~ 18359224 (-) True G1784829
TU2043438 lncRNA upstream 285139 18516987 ~ 18517393 (-) True G1784940
TU2043565 lncRNA upstream 487453 18719301 ~ 18719533 (-) True G1785062
TU2043569 lncRNA upstream 490662 18722510 ~ 18722841 (-) True G1785066
TU2043580 lncRNA upstream 509299 18741147 ~ 18741471 (-) True G1785077
XM_036959577.1 mRNA downstream 130873 18098805 ~ 18100719 (-) True LOC110502115
XM_021579175.2 mRNA downstream 143636 18009923 ~ 18087956 (-) False LOC110501531
XM_036958908.1 mRNA downstream 143636 18009923 ~ 18087956 (-) False LOC110501531
XM_036958903.1 mRNA downstream 235778 17906058 ~ 17995814 (-) False fmnl2a
LOC110502060 mRNA upstream 195294 18427142 ~ 18428030 (-) True LOC110502060
XM_021579180.2 mRNA upstream 276155 18508003 ~ 18526067 (-) True wnt10a
XM_021579181.2 mRNA upstream 301748 18533596 ~ 18569048 (-) True LOC101268914
XM_021579184.2 mRNA upstream 385678 18617526 ~ 18767708 (-) False LOC110501539
XM_021579185.2 mRNA upstream 385678 18617526 ~ 18767708 (-) False LOC110501539
TU2042341 other downstream 327641 17869529 ~ 17903951 (-) False G1783895
TU2042338 other downstream 327641 17870128 ~ 17903951 (-) True G1783895
TU2041294 other downstream 1168144 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other downstream 1168207 17057122 ~ 17063385 (-) True LOC110501514
TU2039451 other downstream 2406378 15685856 ~ 15825214 (-) True b3galt1b
TU2044261 other upstream 943719 19175567 ~ 19177740 (-) False LOC110501547
TU2044262 other upstream 943719 19175567 ~ 19179184 (-) True LOC110501547
TU2044318 other upstream 1089340 19321188 ~ 19321859 (-) True G1785753
TU2044972 other upstream 1424434 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 2113851 20345699 ~ 20346014 (-) True G1786832

Expression Profile