RNA id: TU2043735


Basic Information

Item Value
RNA id TU2043735
length 207
lncRNA type intronic
GC content 0.37
exon number 1
gene id G1785218
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 18945337 ~ 18945543 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agataaagcaaagcagttcgacacatacaacgacacagagttacacatggagtaaaacaaacatacagtcaataatacagtataaacaagtctaaatacgatgtgagcaaatgaggtgagataagggaggtaaaggcaaaaaggccatggtggcaaagtaaatacaatatagcaagtaaaacactggaatggtagatttgcaatggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2043601 lncRNA downstream 162251 18782739 ~ 18783086 (-) True G1785098
TU2043580 lncRNA downstream 203866 18741147 ~ 18741471 (-) True G1785077
TU2043569 lncRNA downstream 222496 18722510 ~ 18722841 (-) True G1785066
TU2043565 lncRNA downstream 225804 18719301 ~ 18719533 (-) True G1785062
TU2043438 lncRNA downstream 427944 18516987 ~ 18517393 (-) True G1784940
TU2043718 lncRNA upstream 7744 18953287 ~ 18955894 (-) True LOC110501540
TU2043748 lncRNA upstream 28548 18974091 ~ 18974304 (-) True G1785231
TU2043750 lncRNA upstream 29612 18975155 ~ 18975497 (-) True G1785233
TU2043767 lncRNA upstream 37420 18982963 ~ 18983233 (-) True G1785249
TU2043774 lncRNA upstream 42373 18987916 ~ 18988130 (-) True G1785256
XM_021579184.2 mRNA downstream 177629 18617526 ~ 18767708 (-) False LOC110501539
XM_021579185.2 mRNA downstream 177629 18617526 ~ 18767708 (-) False LOC110501539
XM_021579186.2 mRNA downstream 177629 18617526 ~ 18767708 (-) True LOC110501539
XM_021579181.2 mRNA downstream 376289 18533596 ~ 18569048 (-) True LOC101268914
XM_021579180.2 mRNA downstream 419270 18508003 ~ 18526067 (-) True wnt10a
XM_036958921.1 mRNA upstream 8081 18953624 ~ 18961857 (-) False LOC110501540
XM_021579187.2 mRNA upstream 8081 18953624 ~ 18962508 (-) False LOC110501540
XM_021579190.2 mRNA upstream 8081 18953624 ~ 18962508 (-) False LOC110501540
XM_021579191.2 mRNA upstream 44977 18990520 ~ 19021140 (-) True LOC110501541
XM_021579192.2 mRNA upstream 88922 19034465 ~ 19036509 (-) True LOC110501543
TU2042341 other downstream 1041386 17869529 ~ 17903951 (-) False G1783895
TU2042338 other downstream 1041386 17870128 ~ 17903951 (-) True G1783895
TU2041294 other downstream 1881889 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other downstream 1881952 17057122 ~ 17063385 (-) True LOC110501514
TU2039451 other downstream 3120123 15685856 ~ 15825214 (-) True b3galt1b
TU2044261 other upstream 230024 19175567 ~ 19177740 (-) False LOC110501547
TU2044262 other upstream 230024 19175567 ~ 19179184 (-) True LOC110501547
TU2044318 other upstream 375645 19321188 ~ 19321859 (-) True G1785753
TU2044972 other upstream 710739 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 1400156 20345699 ~ 20346014 (-) True G1786832

Expression Profile