RNA id: TU2043750


Basic Information

Item Value
RNA id TU2043750
length 343
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1785233
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 18975155 ~ 18975497 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGTGTCGAAAGAGAACGAAGAGGGACattaacctatgtttgaaccgaCCCGGCTGTAACTCTGGGGAGATAAGATAGGACAGGGAGAGCCACTCCAGAGCTCTCGTATCTGGGGGAGACTGGAACTGTGAGCTGAGTGGTAAAAAACTGTGGTGAGACTTCATGAGAAAATCCCATGgttagtgtgtatgtatgtgtgtaggttAAGAGAATATTATAAAAGGAACGTCTTTGTATATGCATGGCAGAGCTCTCTAAATAAACATTCATGACTttgtagctgggcctccgtctgatTCATTCCAACCAGTTTCCGACAAATTCTGGGTTTCAGGCTGAGT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2043748 lncRNA downstream 851 18974091 ~ 18974304 (-) True G1785231
TU2043718 lncRNA downstream 19261 18953287 ~ 18955894 (-) True LOC110501540
TU2043735 lncRNA downstream 29612 18945337 ~ 18945543 (-) True G1785218
TU2043601 lncRNA downstream 192069 18782739 ~ 18783086 (-) True G1785098
TU2043580 lncRNA downstream 233684 18741147 ~ 18741471 (-) True G1785077
TU2043767 lncRNA upstream 7466 18982963 ~ 18983233 (-) True G1785249
TU2043774 lncRNA upstream 12419 18987916 ~ 18988130 (-) True G1785256
TU2044203 lncRNA upstream 79004 19054501 ~ 19054722 (-) True G1785657
TU2044206 lncRNA upstream 85715 19061212 ~ 19061424 (-) True G1785660
TU2044301 lncRNA upstream 291451 19266948 ~ 19267696 (-) True G1785740
XM_021579187.2 mRNA downstream 12647 18953624 ~ 18962508 (-) False LOC110501540
XM_021579190.2 mRNA downstream 12647 18953624 ~ 18962508 (-) False LOC110501540
XM_036958921.1 mRNA downstream 13298 18953624 ~ 18961857 (-) False LOC110501540
XM_021579185.2 mRNA downstream 207447 18617526 ~ 18767708 (-) False LOC110501539
XM_021579191.2 mRNA upstream 15023 18990520 ~ 19021140 (-) True LOC110501541
XM_021579192.2 mRNA upstream 58968 19034465 ~ 19036509 (-) True LOC110501543
XM_021579198.2 mRNA upstream 200769 19176266 ~ 19178833 (-) False LOC110501547
XM_021579200.2 mRNA upstream 200769 19176266 ~ 19178839 (-) False LOC110501547
XM_021579199.2 mRNA upstream 200769 19176266 ~ 19179265 (-) False LOC110501547
TU2042341 other downstream 1071204 17869529 ~ 17903951 (-) False G1783895
TU2042338 other downstream 1071204 17870128 ~ 17903951 (-) True G1783895
TU2041294 other downstream 1911707 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other downstream 1911770 17057122 ~ 17063385 (-) True LOC110501514
TU2039451 other downstream 3149941 15685856 ~ 15825214 (-) True b3galt1b
TU2044261 other upstream 200070 19175567 ~ 19177740 (-) False LOC110501547
TU2044262 other upstream 200070 19175567 ~ 19179184 (-) True LOC110501547
TU2044318 other upstream 345691 19321188 ~ 19321859 (-) True G1785753
TU2044972 other upstream 680785 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 1370202 20345699 ~ 20346014 (-) True G1786832

Expression Profile