RNA id: TU2044203


Basic Information

Item Value
RNA id TU2044203
length 222
lncRNA type inter_gene
GC content 0.66
exon number 1
gene id G1785657
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19054501 ~ 19054722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggtgtctccggttcgcctgcatagcccagtgcgggctattccaccttgccgcactggcagggcgaccgggaccattcaaccgggtaaggttgggcaggctcggtgctcaagagctccagtgcgcctgcacggtccggtctttccagtaccacctccacacccaagccctccggtagcagctccccgcaccaggcttcctgtgcgtgacctcggcccagtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2043774 lncRNA downstream 66371 18987916 ~ 18988130 (-) True G1785256
TU2043767 lncRNA downstream 71268 18982963 ~ 18983233 (-) True G1785249
TU2043750 lncRNA downstream 79004 18975155 ~ 18975497 (-) True G1785233
TU2043748 lncRNA downstream 80197 18974091 ~ 18974304 (-) True G1785231
TU2043718 lncRNA downstream 98607 18953287 ~ 18955894 (-) True LOC110501540
TU2044206 lncRNA upstream 6490 19061212 ~ 19061424 (-) True G1785660
TU2044301 lncRNA upstream 212226 19266948 ~ 19267696 (-) True G1785740
TU2044304 lncRNA upstream 225763 19280485 ~ 19280928 (-) False G1785743
TU2044305 lncRNA upstream 225763 19280485 ~ 19280892 (-) True G1785743
TU2044303 lncRNA upstream 226285 19281007 ~ 19282658 (-) True G1785742
XM_021579192.2 mRNA downstream 17992 19034465 ~ 19036509 (-) True LOC110501543
XM_021579191.2 mRNA downstream 33361 18990520 ~ 19021140 (-) True LOC110501541
XM_021579187.2 mRNA downstream 91993 18953624 ~ 18962508 (-) False LOC110501540
XM_021579190.2 mRNA downstream 91993 18953624 ~ 18962508 (-) False LOC110501540
XM_036958921.1 mRNA downstream 92644 18953624 ~ 18961857 (-) False LOC110501540
XM_021579198.2 mRNA upstream 121544 19176266 ~ 19178833 (-) False LOC110501547
XM_021579200.2 mRNA upstream 121544 19176266 ~ 19178839 (-) False LOC110501547
XM_021579199.2 mRNA upstream 121544 19176266 ~ 19179265 (-) False LOC110501547
XM_021579201.2 mRNA upstream 121544 19176266 ~ 19179266 (-) False LOC110501547
XM_021579206.2 mRNA upstream 162382 19217104 ~ 19224140 (-) False LOC110501550
TU2042341 other downstream 1150550 17869529 ~ 17903951 (-) False G1783895
TU2042338 other downstream 1150550 17870128 ~ 17903951 (-) True G1783895
TU2041294 other downstream 1991053 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other downstream 1991116 17057122 ~ 17063385 (-) True LOC110501514
TU2039451 other downstream 3229287 15685856 ~ 15825214 (-) True b3galt1b
TU2044261 other upstream 120845 19175567 ~ 19177740 (-) False LOC110501547
TU2044262 other upstream 120845 19175567 ~ 19179184 (-) True LOC110501547
TU2044318 other upstream 266466 19321188 ~ 19321859 (-) True G1785753
TU2044972 other upstream 601560 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 1290977 20345699 ~ 20346014 (-) True G1786832

Expression Profile