RNA id: TU2044206


Basic Information

Item Value
RNA id TU2044206
length 213
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1785660
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19061212 ~ 19061424 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgattcctgcttacaagcaaaaactaaagcaggaagtacccgtgacttgctcaatacggaagtggtcagatgcaCCCCCACATGGATGCTACGCTagaggactgctttgctagcacagactggaatgtgttctgggattcatccaatggcattgaggagtataccacctcagtcatcggcttcatcaataagtgcatcaacgacgtcatccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044203 lncRNA downstream 6490 19054501 ~ 19054722 (-) True G1785657
TU2043774 lncRNA downstream 73082 18987916 ~ 18988130 (-) True G1785256
TU2043767 lncRNA downstream 77979 18982963 ~ 18983233 (-) True G1785249
TU2043750 lncRNA downstream 85715 18975155 ~ 18975497 (-) True G1785233
TU2043748 lncRNA downstream 86908 18974091 ~ 18974304 (-) True G1785231
TU2044301 lncRNA upstream 205524 19266948 ~ 19267696 (-) True G1785740
TU2044304 lncRNA upstream 219061 19280485 ~ 19280928 (-) False G1785743
TU2044305 lncRNA upstream 219061 19280485 ~ 19280892 (-) True G1785743
TU2044303 lncRNA upstream 219583 19281007 ~ 19282658 (-) True G1785742
TU2044309 lncRNA upstream 221707 19283131 ~ 19283978 (-) True G1785744
XM_021579192.2 mRNA downstream 24703 19034465 ~ 19036509 (-) True LOC110501543
XM_021579191.2 mRNA downstream 40072 18990520 ~ 19021140 (-) True LOC110501541
XM_021579187.2 mRNA downstream 98704 18953624 ~ 18962508 (-) False LOC110501540
XM_021579190.2 mRNA downstream 98704 18953624 ~ 18962508 (-) False LOC110501540
XM_036958921.1 mRNA downstream 99355 18953624 ~ 18961857 (-) False LOC110501540
XM_021579198.2 mRNA upstream 114842 19176266 ~ 19178833 (-) False LOC110501547
XM_021579200.2 mRNA upstream 114842 19176266 ~ 19178839 (-) False LOC110501547
XM_021579199.2 mRNA upstream 114842 19176266 ~ 19179265 (-) False LOC110501547
XM_021579201.2 mRNA upstream 114842 19176266 ~ 19179266 (-) False LOC110501547
XM_021579206.2 mRNA upstream 155680 19217104 ~ 19224140 (-) False LOC110501550
TU2042341 other downstream 1157261 17869529 ~ 17903951 (-) False G1783895
TU2042338 other downstream 1157261 17870128 ~ 17903951 (-) True G1783895
TU2041294 other downstream 1997764 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other downstream 1997827 17057122 ~ 17063385 (-) True LOC110501514
TU2039451 other downstream 3235998 15685856 ~ 15825214 (-) True b3galt1b
TU2044261 other upstream 114143 19175567 ~ 19177740 (-) False LOC110501547
TU2044262 other upstream 114143 19175567 ~ 19179184 (-) True LOC110501547
TU2044318 other upstream 259764 19321188 ~ 19321859 (-) True G1785753
TU2044972 other upstream 594858 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 1284275 20345699 ~ 20346014 (-) True G1786832

Expression Profile