RNA id: TU2044303


Basic Information

Item Value
RNA id TU2044303
length 1652
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1785742
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19281007 ~ 19282658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaactctgtcaggtgaGATGGGGATTGtcggtgcacagctattttcaggtctctccagagatgttcgatcaggttcaagtacaggctctggctgggccactcaaggacattcagagacttgtcccgaaaccactcctaagatgtcttggctgtgtgtttaagtTTGTTGtccttgttggaaggtgaacctttgccccagtctgaggtcctggagataggtttccatcaaggatatTTCTGTacgttgctctgttcatctttccctcgatcctgactagtctcccagtccctgccgctgaaaaacatccccacaacataatgctgccaccaccatgcttcaccttagggatggtgccaggtttcctccagacgtgacgcttttcATTCAtaccaaagagttaaatcttggtttcatcagaccagagaatcttgcttcttaTGGTCTGAGATTCCTTTAGTTGCCAAAAGGCagactccaagcgggctgtcatgtgccttttactgaggagtggcttccgtctggccactaccataaaggtggagtgctgcagagatggttgtccttctggaaggttgtcccatttccacagaggaactctagagctctgtcagagtgaccattaggctcttggtcacctccctgacaaaggcccttcttccccaattgctcagtttggccgggcggcaagCTCTAGGAGCTCTAGAgtcatggtggttccaaacttcttccatttaagaatgttagaggccattgtgttcttggggaccttcaatgaggCAGAATTCTTttctacccttctccagatctgcacctcgacacaatcctgtcttggaccTCTACtgacaattcattcgacctcatggcttggttttttctctgacatgcactgtcaactatgggactttgtgcctttccaaatcatgtccaattaatttaatttaccacatgtggactccaatcaagttgtagaaacatctcaaggatgaccaatggaaaaataatgcacccgagctcaattttgagtctcatagcaaagggtctgaatacttatgtaaataagttatttgttattttttctaaaaatcctgttttcgctttgtcattatggggtattgtgtgtagattgatgaggaaaacaattaatttaatacattttataataaggctgtaactaaacaaaatgtggaaaaagtgaaggggtctgaatacttcccgaatgcgcTGTATAATGCTTCTTAATGTAATTTCTGCTCGGCATCAGACtaattttgtgcttcagttgcacttctccacttTGGATGAACATTCATGAACAGGCATTCTATCAACAGACAGtgctctgactgatgtgtagctacttttctctggtacttttctcagTGTAGCCAGCCTCTGGTAAAATGCAAGGTTAACTTCAAGCAAAACactaggaaatgtagctggcacCATTCTTTCTAATCATAAACATATGTTGGACCATTCATAGTTATTTGCAAAAAAGGCCTTGCTTTTTCACTCTAAGAATTTACTTGtgttgcacttctgttgtcagctgatgaaaatgaagctattttcttCCGAATatgttgcactaatgtattttctgtgaaggaaaactatagttgcaTGCCCCTGATCACTCTAGTTaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044304 lncRNA downstream 79 19280485 ~ 19280928 (-) False G1785743
TU2044305 lncRNA downstream 115 19280485 ~ 19280892 (-) True G1785743
TU2044301 lncRNA downstream 13311 19266948 ~ 19267696 (-) True G1785740
TU2044206 lncRNA downstream 219583 19061212 ~ 19061424 (-) True G1785660
TU2044203 lncRNA downstream 226285 19054501 ~ 19054722 (-) True G1785657
TU2044309 lncRNA upstream 473 19283131 ~ 19283978 (-) True G1785744
TU2044310 lncRNA upstream 1373 19284031 ~ 19284379 (-) True G1785745
TU2044313 lncRNA upstream 8709 19291367 ~ 19291588 (-) True G1785748
TU2044317 lncRNA upstream 36834 19319492 ~ 19319839 (-) True G1785752
TU2044427 lncRNA upstream 203470 19486128 ~ 19486335 (-) True G1785857
XM_021579209.2 mRNA downstream 1495 19260461 ~ 19279512 (-) True slc40a1
XM_021579205.2 mRNA downstream 51139 19217104 ~ 19229868 (-) True LOC110501550
XM_021579206.2 mRNA downstream 56867 19217104 ~ 19224140 (-) False LOC110501550
XM_021579201.2 mRNA downstream 101741 19176266 ~ 19179266 (-) False LOC110501547
XM_021579199.2 mRNA downstream 101742 19176266 ~ 19179265 (-) False LOC110501547
XM_021579217.2 mRNA upstream 28631 19311289 ~ 19313728 (-) False zgc:136439
XM_021579216.2 mRNA upstream 28764 19311422 ~ 19313726 (-) True zgc:136439
XR_005038798.1 mRNA upstream 40347 19323005 ~ 19330646 (-) False osgepl1
XM_021579215.2 mRNA upstream 42000 19324658 ~ 19330646 (-) True osgepl1
XM_021579219.2 mRNA upstream 56094 19338752 ~ 19345836 (-) False ormdl1
TU2044262 other downstream 101823 19175567 ~ 19179184 (-) True LOC110501547
TU2044261 other downstream 103267 19175567 ~ 19177740 (-) False LOC110501547
TU2042341 other downstream 1377056 17869529 ~ 17903951 (-) False G1783895
TU2042338 other downstream 1377056 17870128 ~ 17903951 (-) True G1783895
TU2041295 other downstream 2217622 17057122 ~ 17063385 (-) True LOC110501514
TU2044318 other upstream 38530 19321188 ~ 19321859 (-) True G1785753
TU2044972 other upstream 373624 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 1063041 20345699 ~ 20346014 (-) True G1786832
TU2045833 other upstream 1107858 20390516 ~ 20455983 (-) True G1787166
TU2047639 other upstream 2508098 21790756 ~ 21820945 (-) True LOC110501594

Expression Profile