RNA id: TU2044998


Basic Information

Item Value
RNA id TU2044998
length 642
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1786380
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19687765 ~ 19688406 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCACCCCTGAGTAGATACTTTGTAGAAgaaactttggcagcgattacagctataagtctttctgggtaagtctctaagagctttccacgcctggattgtgcaacatgttcctattattattttcaaaattcttcaagctctgtcaaattgtttgttgatcattgcaagacaaccattttcaggtcttgccatagattttcaagtagatttcattcaaaactgtaactcggccactcaagaacattcactgtcttcttggtaagcaactccagtgtatatttgtccttgtgttttaggttactgtcctgttgagaggtgaattaatctcccagtgtctggtggaaagcagacagaaaacgtttttcctctaggattttgattgtgcttagctccattccatttatttttcatcctgaaaaactccccagtgtttaatgattacaagcatacccataacatcaaattaaatcaaattgtatttgtcacacacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtacttctagttccgaccgtgcagtaatatctaacaagtaatctgacctaacaatttcacaacaactaccttatacacacaagtgtaaaggaatgattaagaatatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044997 lncRNA downstream 596 19686490 ~ 19687169 (-) True G1786379
TU2044431 lncRNA downstream 197032 19490519 ~ 19490733 (-) True G1785861
TU2044427 lncRNA downstream 201430 19486128 ~ 19486335 (-) True G1785857
TU2044317 lncRNA downstream 367926 19319492 ~ 19319839 (-) True G1785752
TU2044313 lncRNA downstream 396177 19291367 ~ 19291588 (-) True G1785748
TU2045193 lncRNA upstream 285914 19974320 ~ 19974561 (-) True G1786566
TU2045206 lncRNA upstream 300462 19988868 ~ 19989288 (-) True G1786579
TU2045273 lncRNA upstream 393980 20082386 ~ 20082662 (-) True G1786646
TU2045283 lncRNA upstream 402275 20090681 ~ 20091112 (-) True G1786654
TU2045341 lncRNA upstream 467057 20155463 ~ 20183323 (-) True G1786709
XM_021579233.2 mRNA downstream 21564 19655763 ~ 19666201 (-) False znf142
XM_036958937.1 mRNA downstream 21564 19655763 ~ 19666201 (-) False znf142
XM_036958934.1 mRNA downstream 84207 19572445 ~ 19603558 (-) True LOC110501567
XM_036958933.1 mRNA downstream 117135 19544358 ~ 19570630 (-) True LOC110501564
XM_021579226.2 mRNA downstream 117215 19544358 ~ 19570550 (-) False LOC110501564
XM_021579240.2 mRNA upstream 55314 19743720 ~ 19761865 (-) False vil1
XM_021579239.2 mRNA upstream 55314 19743720 ~ 19763860 (-) True vil1
XM_036958942.1 mRNA upstream 81002 19769408 ~ 19787506 (-) False LOC110501577
XM_036958940.1 mRNA upstream 81002 19769408 ~ 19787524 (-) False LOC110501577
XM_036958941.1 mRNA upstream 81002 19769408 ~ 19787525 (-) True LOC110501577
TU2044972 other downstream 28665 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 365906 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 508581 19175567 ~ 19179184 (-) True LOC110501547
TU2044261 other downstream 510025 19175567 ~ 19177740 (-) False LOC110501547
TU2042338 other downstream 1783814 17870128 ~ 17903951 (-) True G1783895
TU2045476 other upstream 657293 20345699 ~ 20346014 (-) True G1786832
TU2045833 other upstream 702110 20390516 ~ 20455983 (-) True G1787166
TU2047639 other upstream 2102350 21790756 ~ 21820945 (-) True LOC110501594
TU2048419 other upstream 2729724 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 3476075 23164481 ~ 23169363 (-) True G1790280

Expression Profile