RNA id: TU2044588


Basic Information

Item Value
RNA id TU2044588
length 277
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1786002
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19765638 ~ 19765914 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaccttagagatcccttttatgtctctattttggtctGGTCacggtgtgagttggggtgggcattctatgttttcaaTTTCTTTGtagttggccgggtatggttctcaatcagggacagctgtctatcgttgtctctgattgggaaccatacttaggtacccttttccccacctgtgtttgtgggaggtTGACTTTGTTTAGAGCACTTTGCTTGTGAGCTTCACGGTTAGTTTTTTtagtgtttatagttttgtttggCGTCATTTGGattaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044543 lncRNA upstream 79636 19684684 ~ 19686002 (+) True LOC110501572
TU2044538 lncRNA upstream 91804 19673600 ~ 19673834 (+) True G1785961
TU2044530 lncRNA upstream 99469 19665910 ~ 19666169 (+) True G1785953
TU2044529 lncRNA upstream 99978 19665448 ~ 19665660 (+) True G1785952
TU2044528 lncRNA upstream 100420 19665000 ~ 19665218 (+) True G1785951
TU2044592 lncRNA downstream 2115 19768029 ~ 19768416 (+) True G1786006
TU2044593 lncRNA downstream 2559 19768473 ~ 19768832 (+) True G1786007
TU2044765 lncRNA downstream 230766 19996680 ~ 19997210 (+) True G1786167
TU2044884 lncRNA downstream 417985 20183899 ~ 20184166 (+) True G1786280
TU2044886 lncRNA downstream 421669 20187583 ~ 20187801 (+) True G1786282
XM_021579241.2 mRNA upstream 21689 19734287 ~ 19743949 (+) False zgc:66484
XM_021579243.2 mRNA upstream 21689 19738831 ~ 19743949 (+) False zgc:66484
XM_036958939.1 mRNA upstream 21689 19738974 ~ 19743949 (+) False zgc:66484
XM_021579242.2 mRNA upstream 21689 19738992 ~ 19743949 (+) True zgc:66484
XM_021579237.2 mRNA upstream 38770 19689016 ~ 19726868 (+) False LOC110501573
XR_002470296.2 mRNA downstream 106233 19872147 ~ 19872697 (+) True LOC110502116
XM_036958943.1 mRNA downstream 231925 19997839 ~ 20175660 (+) False adarb1b
XM_036958944.1 mRNA downstream 231925 19997839 ~ 20175660 (+) False adarb1b
XM_036958945.1 mRNA downstream 231925 19997839 ~ 20175660 (+) False adarb1b
XM_021579245.2 mRNA downstream 353763 20119677 ~ 20175660 (+) False adarb1b
TU2044524 other upstream 103712 19661109 ~ 19661926 (+) True G1785947
TU2044159 other upstream 137878 19616995 ~ 19627760 (+) True LOC110501568
TU2044113 other upstream 193199 19570580 ~ 19572439 (+) False ybey
TU2043879 other upstream 567924 19186488 ~ 19197714 (+) True LOC110501548
TU2042944 other upstream 998498 18766458 ~ 18767140 (+) True G1784476
TU2044933 other downstream 515099 20281013 ~ 20281854 (+) False asb1
TU2044940 other downstream 517267 20283181 ~ 20284571 (+) True G1786330
TU2046423 other downstream 1368351 21134265 ~ 21136477 (+) True G1787719
TU2047590 other downstream 2229450 21995364 ~ 21996093 (+) True G1788811
TU2047594 other downstream 2232559 21998473 ~ 21999623 (+) True G1788815

Expression Profile