RNA id: TU2045206


Basic Information

Item Value
RNA id TU2045206
length 421
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1786579
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19988868 ~ 19989288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cattatgtctgtcatagttgaagtgtacctatgatgaaaattacaggcctctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccactgtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccaaatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaactttaacaaatcaaaaactgaaaaattgggtgtgcaaaatgattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaagatttcccaagcttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2045193 lncRNA downstream 14307 19974320 ~ 19974561 (-) True G1786566
TU2044998 lncRNA downstream 300462 19687765 ~ 19688406 (-) True G1786380
TU2044997 lncRNA downstream 301699 19686490 ~ 19687169 (-) True G1786379
TU2044431 lncRNA downstream 498135 19490519 ~ 19490733 (-) True G1785861
TU2044427 lncRNA downstream 502533 19486128 ~ 19486335 (-) True G1785857
TU2045273 lncRNA upstream 93098 20082386 ~ 20082662 (-) True G1786646
TU2045283 lncRNA upstream 101393 20090681 ~ 20091112 (-) True G1786654
TU2045341 lncRNA upstream 166175 20155463 ~ 20183323 (-) True G1786709
TU2045354 lncRNA upstream 182551 20171839 ~ 20175644 (-) True G1786720
TU2045367 lncRNA upstream 201234 20190522 ~ 20190787 (-) True G1786733
XR_005038965.1 mRNA downstream 198945 19788794 ~ 19789923 (-) True LOC118943631
XM_036958941.1 mRNA downstream 201343 19769408 ~ 19787525 (-) True LOC110501577
XM_036958940.1 mRNA downstream 201344 19769408 ~ 19787524 (-) False LOC110501577
XM_036958942.1 mRNA downstream 201362 19769408 ~ 19787506 (-) False LOC110501577
XM_021579239.2 mRNA downstream 225008 19743720 ~ 19763860 (-) True vil1
XM_021579249.2 mRNA upstream 206424 20195712 ~ 20202996 (-) False agr1
XM_021579248.2 mRNA upstream 206424 20195712 ~ 20203864 (-) True agr1
XM_036958953.1 mRNA upstream 390177 20379465 ~ 20502301 (-) False hdac4
XM_036958949.1 mRNA upstream 390177 20379465 ~ 20551605 (-) False hdac4
XM_036958950.1 mRNA upstream 390177 20379465 ~ 20551605 (-) False hdac4
TU2044972 other downstream 329768 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 667009 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 809684 19175567 ~ 19179184 (-) True LOC110501547
TU2044261 other downstream 811128 19175567 ~ 19177740 (-) False LOC110501547
TU2042338 other downstream 2084917 17870128 ~ 17903951 (-) True G1783895
TU2045476 other upstream 356411 20345699 ~ 20346014 (-) True G1786832
TU2045833 other upstream 401228 20390516 ~ 20455983 (-) True G1787166
TU2047639 other upstream 1801468 21790756 ~ 21820945 (-) True LOC110501594
TU2048419 other upstream 2428842 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 3175193 23164481 ~ 23169363 (-) True G1790280

Expression Profile