Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004908 |
| length | 2826 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 17 |
| gene id | XLOC_002640 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 13080092 ~ 13179077 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051124 | synaptic growth at neuromuscular junction | biological_process |
| GO:0033674 | positive regulation of kinase activity | biological_process |
| GO:0071340 | skeletal muscle acetylcholine-gated channel clustering | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0030517 | negative regulation of axon extension | biological_process |
| GO:0043113 | receptor clustering | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0008045 | motor neuron axon guidance | biological_process |
| GO:0007411 | axon guidance | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway | biological_process |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0045211 | postsynaptic membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0043235 | receptor complex | cellular_component |
| GO:0038062 | protein tyrosine kinase collagen receptor activity | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005515 | protein binding | molecular_function |
| GO:0005518 | collagen binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0042802 | identical protein binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| GO:0004713 | protein tyrosine kinase activity | molecular_function |
| GO:0004714 | transmembrane receptor protein tyrosine kinase activity | molecular_function |
| id | description |
|---|---|
| ko01001 | Protein kinases |
| id | description |
|---|---|
| ZDB-GENE-030131-6458 | Enables identical protein binding activity. Acts upstream of or within generation of neurons and neuromuscular junction development. Located in postsynaptic membrane. Is expressed in adaxial cell; musculature system; pectoral fin; and somite. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 9 and fetal akinesia deformation sequence syndrome 1. Orthologous to human MUSK (muscle associated receptor tyrosine kinase). |
| ensembl_id | ENSDART00000163740 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006011 | lncRNA | downstream | 1186399 | 11895373 ~ 11898575 (-) | True | XLOC_002638 |
| TCONS_00004895 | lncRNA | downstream | 1751861 | 11331969 ~ 11333113 (-) | False | XLOC_002632 |
| TCONS_00006010 | lncRNA | downstream | 2297325 | 10784334 ~ 10787649 (-) | True | XLOC_002626 |
| TCONS_00006009 | lncRNA | downstream | 2370747 | 10712178 ~ 10714227 (-) | True | XLOC_002625 |
| TCONS_00004883 | lncRNA | downstream | 2370753 | 10712178 ~ 10714221 (-) | False | XLOC_002625 |
| TCONS_00006012 | lncRNA | upstream | 119986 | 13298839 ~ 13301973 (-) | True | XLOC_002642 |
| TCONS_00006013 | lncRNA | upstream | 1852153 | 15031006 ~ 15042748 (-) | True | XLOC_002656 |
| TCONS_00006014 | lncRNA | upstream | 1854119 | 15032972 ~ 15034960 (-) | True | XLOC_002657 |
| TCONS_00004942 | lncRNA | upstream | 1903557 | 15082410 ~ 15084047 (-) | False | XLOC_002660 |
| TCONS_00004943 | lncRNA | upstream | 1903557 | 15082410 ~ 15086297 (-) | False | XLOC_002660 |
| TCONS_00004906 | mRNA | downstream | 432462 | 12648660 ~ 12652512 (-) | True | XLOC_002639 |
| TCONS_00004905 | mRNA | downstream | 434715 | 12648430 ~ 12650259 (-) | False | XLOC_002639 |
| TCONS_00004904 | mRNA | downstream | 1244621 | 11790881 ~ 11840353 (-) | True | XLOC_002637 |
| TCONS_00004902 | mRNA | downstream | 1323047 | 11593998 ~ 11761927 (-) | False | XLOC_002636 |
| TCONS_00004901 | mRNA | downstream | 1687384 | 11394528 ~ 11397590 (-) | True | XLOC_002635 |
| TCONS_00004912 | mRNA | upstream | 57247 | 13236100 ~ 13239367 (-) | True | XLOC_002641 |
| TCONS_00004914 | mRNA | upstream | 126757 | 13305610 ~ 13343831 (-) | False | XLOC_002644 |
| TCONS_00004915 | mRNA | upstream | 126774 | 13305627 ~ 13396720 (-) | True | XLOC_002644 |
| TCONS_00004916 | mRNA | upstream | 281277 | 13460130 ~ 13772847 (-) | False | XLOC_002645 |
| TCONS_00004917 | mRNA | upstream | 296977 | 13475830 ~ 13772861 (-) | True | XLOC_002645 |
| TCONS_00004903 | other | downstream | 1320535 | 11761380 ~ 11764439 (-) | True | XLOC_002636 |
| TCONS_00004879 | other | downstream | 2752547 | 10319308 ~ 10332427 (-) | False | XLOC_002623 |
| TCONS_00004880 | other | downstream | 2755420 | 10329464 ~ 10329554 (-) | True | XLOC_002623 |
| TCONS_00004869 | other | downstream | 3546648 | 9534782 ~ 9538326 (-) | False | XLOC_002618 |
| TCONS_00004859 | other | downstream | 3943295 | 9141565 ~ 9141679 (-) | True | XLOC_002611 |
| TCONS_00004913 | other | upstream | 126212 | 13305065 ~ 13305183 (-) | True | XLOC_002643 |
| TCONS_00004918 | other | upstream | 428174 | 13607027 ~ 13607143 (-) | True | XLOC_002646 |
| TCONS_00004919 | other | upstream | 433280 | 13612133 ~ 13612248 (-) | True | XLOC_002647 |
| TCONS_00004920 | other | upstream | 752716 | 13931569 ~ 13931696 (-) | True | XLOC_002648 |
| TCONS_00004922 | other | upstream | 1147973 | 14326826 ~ 14488154 (-) | False | XLOC_002649 |
