RNA id: TU2045931


Basic Information

Item Value
RNA id TU2045931
length 311
lncRNA type intronic
GC content 0.49
exon number 2
gene id G1787259
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 20524773 ~ 20532999 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggatgggtgagtaggttggttgggacagatatgtgtaacaggaggaagagggatgggttgagtaattggttgggacagatatatgtaacaggaggaagagggacggGTGAGTAGGTTGGTtgggacagatatgtgtaacaggaggaagagggatgggtgagcaggttggttgggacagatactgtatgtgtgaatACTAATAGAGTGTGAGTAACACGCTCGCCGTTTCTTCAACTGGGAGGTGAGAGGGATGCAATGGAGGTGGAACCCCACacctgatggtgtgtgtgtgtgtagcttgtGTAATTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2045880 lncRNA downstream 124660 20398852 ~ 20400113 (-) True G1787208
TU2045490 lncRNA downstream 170696 20353747 ~ 20354077 (-) True G1786846
TU2045478 lncRNA downstream 178141 20346146 ~ 20346632 (-) True G1786834
TU2045456 lncRNA downstream 199838 20324712 ~ 20324935 (-) True G1786815
TU2045455 lncRNA downstream 200282 20324200 ~ 20324491 (-) True G1786814
TU2046704 lncRNA upstream 565314 21098313 ~ 21122358 (-) True G1787982
TU2046732 lncRNA upstream 603544 21136543 ~ 21136749 (-) True G1788010
TU2046736 lncRNA upstream 605330 21138329 ~ 21139127 (-) True G1788013
TU2046737 lncRNA upstream 608059 21141058 ~ 21141545 (-) True G1788014
TU2046927 lncRNA upstream 857213 21390212 ~ 21395471 (-) True G1788199
XM_036958953.1 mRNA downstream 22472 20379465 ~ 20502301 (-) False hdac4
XM_021579248.2 mRNA downstream 320909 20195712 ~ 20203864 (-) True agr1
XM_021579249.2 mRNA downstream 321777 20195712 ~ 20202996 (-) False agr1
XR_005038965.1 mRNA downstream 734850 19788794 ~ 19789923 (-) True LOC118943631
XM_036958941.1 mRNA downstream 737248 19769408 ~ 19787525 (-) True LOC110501577
XR_005038959.1 mRNA upstream 157517 20690516 ~ 20692314 (-) True LOC118943627
XM_036958954.1 mRNA upstream 197911 20730910 ~ 20739077 (-) False LOC110501586
XM_021579255.2 mRNA upstream 197911 20730910 ~ 20739398 (-) False LOC110501586
XM_021579256.2 mRNA upstream 197911 20730910 ~ 20739420 (-) False LOC110501586
XM_021579257.2 mRNA upstream 197911 20730910 ~ 20739954 (-) True LOC110501586
TU2045833 other downstream 68790 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 178759 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 865673 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 1202914 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 1345589 19175567 ~ 19179184 (-) True LOC110501547
TU2047639 other upstream 1257757 21790756 ~ 21820945 (-) True LOC110501594
TU2048419 other upstream 1885131 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 2631482 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 2899995 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 3793730 24326729 ~ 24327127 (-) True G1791405

Expression Profile