RNA id: TU2047005


Basic Information

Item Value
RNA id TU2047005
length 229
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1788277
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21489121 ~ 21489349 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaaatatccaataaatgttgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaataccgttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtagcttaaAATAATAGCTTTGACTATCATTTTACTGATCATTCAGCAAGTTTCCCTTATCAGCATCCAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2046994 lncRNA downstream 12381 21476524 ~ 21476740 (-) True G1788266
TU2046980 lncRNA downstream 35502 21453414 ~ 21453619 (-) True G1788252
TU2046927 lncRNA downstream 93650 21390212 ~ 21395471 (-) True G1788199
TU2046737 lncRNA downstream 347576 21141058 ~ 21141545 (-) True G1788014
TU2046736 lncRNA downstream 349994 21138329 ~ 21139127 (-) True G1788013
TU2047006 lncRNA upstream 841 21490190 ~ 21490390 (-) True G1788278
TU2047240 lncRNA upstream 74985 21564334 ~ 21564604 (-) True G1788496
TU2047323 lncRNA upstream 175501 21664850 ~ 21667555 (-) False G1788570
TU2047325 lncRNA upstream 175501 21664850 ~ 21668426 (-) True G1788570
TU2047423 lncRNA upstream 288443 21777792 ~ 21778222 (-) True G1788661
XM_021579260.2 mRNA downstream 41918 21143084 ~ 21447203 (-) True LOC110501587
XM_021579258.2 mRNA downstream 41921 21143084 ~ 21447200 (-) False LOC110501587
XM_036958955.1 mRNA downstream 41921 21143084 ~ 21447200 (-) False LOC110501587
XM_021579259.2 mRNA downstream 193292 21143084 ~ 21295829 (-) False LOC110501587
NM_001124521.3 mRNA downstream 711964 20765912 ~ 20777157 (-) True LOC100136257
XM_021579261.2 mRNA upstream 83215 21572564 ~ 21590999 (-) True LOC110501588
XM_021579266.2 mRNA upstream 219532 21708881 ~ 21766231 (-) True LOC110501591
XM_021579269.2 mRNA upstream 299079 21788428 ~ 21913721 (-) False LOC110501594
XM_021579271.2 mRNA upstream 299079 21788428 ~ 21913721 (-) False LOC110501594
XM_021579268.2 mRNA upstream 318961 21808310 ~ 21895607 (-) False LOC110501594
TU2045833 other downstream 1033138 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 1143107 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 1830021 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 2167262 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 2309937 19175567 ~ 19179184 (-) True LOC110501547
TU2047639 other upstream 301407 21790756 ~ 21820945 (-) True LOC110501594
TU2048419 other upstream 928781 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 1675132 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 1943645 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 2837380 24326729 ~ 24327127 (-) True G1791405

Expression Profile