RNA id: TU2047323


Basic Information

Item Value
RNA id TU2047323
length 2676
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id G1788570
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21664850 ~ 21668426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATAGTAAATGATATGGCAAAAATAAGTATCTTCATTTAGGGAGAAGGTGGGGATACCAGAACAAAAATCACTATTAAGACATCATTCTTACAAAAAAAATAGCACTGGAGTCATGCCTACATTGAAAAGACAATTATGGCAGAGACAAGAATGAAAATACATCTTCACATAGTTTTAATAGTGCAGCATAACATTGAAAAGGGACTTACGGAACAACAAAGACAAAAGAAAGATTCACCTTCacccatttattattattatttttttttttacattgtttttgtGCATGATCCCAATAATAAatagaacatcactcagagatgcacaaaaacgatataacattcaaaatgggtgaatcttCCCATCAAAAGAGCTTGTGATACAGTAAACTATGATAATCACACTTTTATAAATCAGCATACATCTTAAAAAGAGATCCATTAATAAAGGAAGGGACATTATCAAAACAAAATCTGATTGGACAAAGGAAAATAAAGTAAAAGtacctgagaaaaaaaaaaaaaaactttatacGATATATGCATTCCGTAAGCACCATTGATTGTTTTTTTGAATTtttgaaaacacacacattttaaaaacATGAGTTTTGAAAAAATTACAAACAATGCACTTATGTATCTGGCACCCTGCCCATCGATAAGAAACTCCATAAATGGATGATATGATCATTTGTTTCATATCTACATTTTAGCTTACCAATTATCATAGGATGTACAGTTTCAGAGTTCCTGTTTTTGCAAATATAAATAGACTACAGGAACCCCATGAATTAAACAACCAAATACATCTCACAGCTGATTTCCTTTGTGCATTAATCACAGCTGATGTTGACAAAAGCTATTGGCtaaggtataaaaaaaatgttttgacaaTGTGAAAGTAAAAACTGAGTTAGACAAAGTTAAAGATGGCTCAAGGGgctgaactttttttttttttacagttttacagGGCAAGTAATTACTTCCTGCAATTATCGCCAGTCATAAAATGTGTCCTATCCACACCGAGCACTGGGAAAACACTCCATAAAGTTCTGTACACAGGTTGACAGTTGATGGAAAAATATTGATAACATGCTCGTCGTCATGGTGTACATCAAGGGTTACagagacaaaaaaacaaaaaatatatgctTTTACTCATCAAATTAAATCAGCAGCAGAATAAGAGTGAGTGGGTGATTGATTTGCATTGTAGGTGCTGATCAAACAAAATGTGTCTAAAATACAATTGTTGGACATACAAACATTATCATGGCATAAATTTTACCATTAAACATAATTGTTGAAATAATCAAATCAGATAAAGTCTCCATTCATGGCTCCTAATGCCCACAGAGGAGTGGTAGAAATGATAAAAACAGATAAATTATTAGGTTATTCGATTATTAGGTAATGGTCTCTATTAAGACCAAGGGAACTTAATTGGATGGTAAATAGTGCTTTTGTTAAACATACTGCAAAATCTATTTACTTGGTCTGTCTTAAATCCATGCCACCTTTTTTAGTGTCATAACATAGTTAAgatttacaaaaacaagtagtgtaAAACATCTGAGAACATCTAAGCTATTATTTGTATAGAAGGGTCATTATGTGAAATACAAACTAAAGTAACAATTTATTTGCATTTCATGGCGTAGTACAGTATTTACACCTGTTTGGAGATGGCATCTGTTTTCTGTTGAAAAGGCAGCAGCATTATAACTTTTGTATTGCAGCTTAGTTTAGTTGAGGGGTTAGTCTTAGTTCACATTAGAACGCATACAAACGTCTTCATCACAGATTTCCTTCATGATCCAGCATTGCCTGGCTGCCAGGGGCCAGAGATAGAGGGATGTAGAGTATGGGGGAGAAATCAAAGGCGGTAGTCAACAGCTGTGCTCAGCTCTCTTCTAATCTCAAACTTCAGATACTGCTTGTTCACAGTGATTCTGAGTAGGCACTGCACAAATGGGcctgtattaaaaataaaaaaaaaagtgtcctaCAATAGCATTGCTGATATAGTGCAGGTCCTCTGTGTCCATATAATCATagtcattatgatctaaaaggctaaacaaATCCTATATCAATACTCCTAGTCCGAGACCATTTATGAATATGGACAGATCTGTAAATCGGATTCGTAAATCAACTAAACAGTCTGATAATGAAGTACATGACCAACTTTTTCCACCCATACTATTTCTAGATTAACAGGTCTGAATTGTGCTTGCTCCAAACCCACACCTGTGAACAAGCAGTGAGGCTATAGACAACCAACAAGAGGATACATCTACATTAGCCAATCAGAGCACTTTTCCCCTCACAACAAAAACAATACCTTTGCTTTTCTCCTTATGGTCTGACTGAAGCCTCTGTCTCATTATTTAAACTTGTACCATTTCAAGAGGCCACATGACAGTATGAGCCATTGATAAAAGCCTGGCACTTTCAGTACCATAAAGTCCTTCTTTTTACACAACGAAATCCGACATAACAAAACACACACGTCGTCGTCAGTTGACGACGAGTCGCGTCAACGTTGTACAAAGGAAAAAGAGTTCATCTTGTAGAGATGGATCGGTCATCTCCACACTGCAGAGAATATATAGGTTGAATGAGAGGCACTGGGGGTAAGGTCTCTGTTTGGTCGTTTTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2047240 lncRNA downstream 100246 21564334 ~ 21564604 (-) True G1788496
TU2047006 lncRNA downstream 174460 21490190 ~ 21490390 (-) True G1788278
TU2047005 lncRNA downstream 175501 21489121 ~ 21489349 (-) True G1788277
TU2046994 lncRNA downstream 188110 21476524 ~ 21476740 (-) True G1788266
TU2046980 lncRNA downstream 211231 21453414 ~ 21453619 (-) True G1788252
TU2047423 lncRNA upstream 110237 21777792 ~ 21778222 (-) True G1788661
TU2047426 lncRNA upstream 113886 21781441 ~ 21781669 (-) True G1788664
TU2047635 lncRNA upstream 115660 21783215 ~ 21785625 (-) True G1788854
TU2047640 lncRNA upstream 120335 21787890 ~ 21788186 (-) True G1788859
TU2047641 lncRNA upstream 121303 21788858 ~ 21789151 (-) False LOC110501594
XM_021579261.2 mRNA downstream 73851 21572564 ~ 21590999 (-) True LOC110501588
XM_021579260.2 mRNA downstream 217647 21143084 ~ 21447203 (-) True LOC110501587
XM_021579258.2 mRNA downstream 217650 21143084 ~ 21447200 (-) False LOC110501587
XM_036958955.1 mRNA downstream 217650 21143084 ~ 21447200 (-) False LOC110501587
XM_021579259.2 mRNA downstream 369021 21143084 ~ 21295829 (-) False LOC110501587
XM_021579266.2 mRNA upstream 41326 21708881 ~ 21766231 (-) True LOC110501591
XM_021579269.2 mRNA upstream 120873 21788428 ~ 21913721 (-) False LOC110501594
XM_021579271.2 mRNA upstream 120873 21788428 ~ 21913721 (-) False LOC110501594
XM_021579268.2 mRNA upstream 140755 21808310 ~ 21895607 (-) False LOC110501594
XM_021579267.2 mRNA upstream 140755 21808310 ~ 21913721 (-) False LOC110501594
TU2045833 other downstream 1208867 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 1318836 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 2005750 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 2342991 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 2485666 19175567 ~ 19179184 (-) True LOC110501547
TU2047639 other upstream 123201 21790756 ~ 21820945 (-) True LOC110501594
TU2048419 other upstream 750575 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 1496926 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 1765439 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 2659174 24326729 ~ 24327127 (-) True G1791405

Expression Profile