RNA id: TCONS_00051542


Basic Information

Item Value
RNA id TCONS_00051542
length 721
RNA type mRNA
GC content 0.52
exon number 4
gene id XLOC_026448
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31063206 ~ 31079246 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGTGTGAACGCGCATGCGCATGAGGACCACCATTTGTGGTAGCAACAGAAGCTAATGGAAAGACGCTCGTCAGTTGTAAAGgaaagaaaaaaaaagccaccCAGATGGAGCTTCTTCAGCAGAATGTGGCAGCTGCAGGACGGGTGATCATGGACGCGATCCAGGCTGAATGGGAGCCGCTGTCTAACTGGGAGCTGGACCAGCGGCTGGACCGTGCTGTGGAGGAGATGATAGAGGCTGACCTAGTGGCGCAGGTACAGGAGCAGATAAACTCAGCTCAACAGAAGGACTCAGCAGATCAGACACAGACTCCAAAGCAGTCAGAGCCCAAGCAGCCCGTTCAAGAGTCTGCCTTACAGCGTTCACATGCTACTGAAGTCATGGAGGCAAATCCCACCGTTCAGTATGTTACCAATTTTTTGCAGAGCTCCAACATGGGCTACAGCAAAAACCGCATGTCTGGAAGAGCTCGGCTGTCCATGTCTCACACTGTCCTGCTGTCCCTCACCCTCCTGTCCAAACGTGTCAGCTATCGGAGCGTGTCCTCCAGTTTCCATCTGGAGAAGGGAAATATTCACAGGATCTTCTTTTCTTTCTGTGATCAAGTGATCGCACAGCAGAATCGCATCATTCAGTGGCCTACAGGAGGCAATACAAAATCTGCTCCCTTTCTCCAGCTGGCACAGTCGCAGTGAGGGTCTGGAAGAAAGAGGTCTTCC

Function

GO:

id name namespace
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0030891 VCB complex cellular_component
GO:0070449 elongin complex cellular_component

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04066 HIF-1 signaling pathway
ko05200 Pathways in cancer
ko05211 Renal cell carcinoma
ko05170 Human immunodeficiency virus 1 infection
ko04121 Ubiquitin system
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-020415-1 Predicted to enable metal ion binding activity. Predicted to act upstream of or within transcription elongation from RNA polymerase II promoter. Predicted to be part of VCB complex and elongin complex. Is expressed in several structures, including axis; mesoderm; notochord; retina; and solid lens vesicle. Orthologous to human ELOB (elongin B).

Ensembl:

ensembl_id ENSDART00000147077

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053051 lncRNA downstream 5627 31041952 ~ 31058290 (-) True XLOC_026446
TCONS_00053050 lncRNA downstream 367627 30694877 ~ 30696290 (-) True XLOC_026439
TCONS_00051527 lncRNA downstream 387889 30670505 ~ 30676028 (-) True XLOC_026438
TCONS_00051515 lncRNA downstream 815658 30247749 ~ 30248259 (-) True XLOC_026434
TCONS_00053049 lncRNA downstream 862086 30199036 ~ 30201831 (-) True XLOC_026432
TCONS_00051546 lncRNA upstream 12212 31080680 ~ 31082367 (-) False XLOC_026449
TCONS_00053052 lncRNA upstream 24744 31093212 ~ 31093764 (-) True XLOC_026450
TCONS_00051549 lncRNA upstream 36900 31105368 ~ 31108643 (-) False XLOC_026451
TCONS_00053053 lncRNA upstream 105665 31174133 ~ 31177209 (-) True XLOC_026453
TCONS_00052472 lncRNA upstream 443002 31511470 ~ 31600282 (-) False XLOC_026457
TCONS_00051538 mRNA downstream 6293 31042585 ~ 31057624 (-) True XLOC_026447
TCONS_00051535 mRNA downstream 44085 30998362 ~ 31019832 (-) False XLOC_026445
TCONS_00051536 mRNA downstream 44169 30998481 ~ 31019748 (-) False XLOC_026445
TCONS_00051537 mRNA downstream 44202 30998484 ~ 31019715 (-) True XLOC_026445
TCONS_00051534 mRNA downstream 101271 30947964 ~ 30962646 (-) True XLOC_026444
TCONS_00051544 mRNA upstream 808 31069276 ~ 31079246 (-) False XLOC_026448
TCONS_00051545 mRNA upstream 863 31069331 ~ 31078348 (-) True XLOC_026448
TCONS_00051547 mRNA upstream 12232 31080700 ~ 31086770 (-) True XLOC_026449
TCONS_00051548 mRNA upstream 36423 31104891 ~ 31115996 (-) False XLOC_026451
TCONS_00051550 mRNA upstream 38999 31107467 ~ 31115601 (-) True XLOC_026451
TCONS_00051529 other downstream 263259 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 575823 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 1193793 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 1195185 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 1196377 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051585 other upstream 1117666 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 1904506 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 2355724 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 2880201 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 2954697 34023165 ~ 34023613 (-) True XLOC_026529

Expression Profile

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