RNA id: TU2047635


Basic Information

Item Value
RNA id TU2047635
length 2411
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1788854
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21783215 ~ 21785625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATTATGCATAATTATTGAATAATCACATTAATCACAGTATCGATTTAGGTTTTATGTATCAAGGTAAGGGGATACTTTTGGTTAGAAGCATTTGATTTTGCAATGCATACTTTATTTTGGATTTATGTGCCCATAAACTGTTCACCCCCTAACATAAAGAGACACAAAATGTTACATagttacactgcatttctgaaaTCCTTATAGAAGAAACTGTCAGACAGCTGGATCCAGGATTCAAGTTCCACTTAACTGATTAATTCTCAATATATGATACAACGATAACTTACACAGCCGTAAATGCAAGGCCAGAAAAGTAATGTTTTATGTCACACGATTTTGGACAAATCCGTCAAGACACCAACCATAAAGGGTTAAACATTGGTTTAAAATCAACTCATTAATTGTATTGAATATAGCTATGATTCCCCATTATATCTTAATGTAATGGGATGGGAAAAAATTGCAGATTATTATCAACAGCTGTAACAAGTTGTCCAGTGAATCCTCACTGGTGCCCTAGTTTATAAAAGAAAAAGACCCATATATGTTACCTATTGTATTGCCCCCATATTCCCAACTGACCATAGTCCAGCCTACATCATCACTCATGACAAAATGGGTAaatgtattatgacagaaaaAGCCTTTGGGCTTTCTGAGAATCAAGCCAAAAAATGCCTAAAACTATTGGGATACATATCAGGTACATTTTCAATATGACTACTCTATGTATACTCCCTATAAACAAACAAAGggaaatctgcagttcaaacgATTACAAAGCACATCCCCCTCCACCGTTTTGGTAAAAGCTGGTGGGTcttgagaaatgtaaccactctcaaattcatagacagggatacagatgcaaggactgaccatccatgatatcacaattatagttttaaccatgtttttaggctgtagagtgtttgtttacaattacattgtgacaaacaatggagtaaaacaagcttatattttgggttctgaaggGGTATGACAGCTAAGCTAATGGGCCATTTGTAAGTTAAACTCTTTAAACATAATGGGTATgtatcattcatttaaaagtccCAAAATGGATACAAccacagattgcccctttaaactaTTGTGTAACATTAATTGACGACAATGAAATGTTTGTCAACAGATTGTAATGCAATTTCAAACAAATAAGTAATTTGACTAGATGCCACTTAAAATGTTCTGCTTTCCCCTAATACACACTAACACGTACACATCAGTGTTTACATTCATTATAACCCTTTAATTATTGCAATTTTTCATTTATATGTAAGAAAATAGGAGTAACTGTCCATTGTTGTTTTGAGTATCGCAATATACAGGTAACAGCAAAAATAAAGGACGTTGGGCCACCAGGAACTGCCAGAACTTCACACTTTAAaacccctatgctcctttgagacccctatttcaaagtcactgagatatcttcgagccatggtagccaaaataataggcaacacacagctcagaaacccatgcataccccacaagacatgccaccagaggtctcttcacagtccccaagtccagaccagattatgggaggcgcacagtactacatcgagccatgactacacggaactctattccacatcaagtaactgatgcaagctgtagaatcatatttaaaaaaacagataaaaatgtcACCTTGGAacaacagggactgtgaagagacatgcatacattgtgatattgttgtatggtggtattgaacattttGTGTTGAGGATATGTGATGGTGTAGGGATGTTATACAAACATAGTtcactgttttatcttttgttttatatataattttgctttggtgtgtttggaccccaggaagagtaactgatgccttggcagcagctaatggggatccctaataaatacaaatacaaatgatGGTATGTTAATTGCTtattaattaactcaggaaccacacctgtgtggaagcacctgctttcaatatactttaaaTCCCTagtttactcaagtgtttcctttattttggcagttgccTGTACATGTGTAATGTATACTAGCCATTTAAACCATTCTAAAGTGTCAATCAAGTCTTCCGATGTGGTACTAGTAGAGAGAGTATAGAGTCTGTGTTTTGATATTTATGGAGAGTCAATTTCAAAGGACTATTGTATTTTTCTAGCATTCCTGTCTTAATACCCAGTATTTGTATGCGGTACTATGTATTATGATTAGTGTTCTTCACCATTTCTTCTCAGCTGCCTGTTTTTCTATGAACCCAATGCCAGTTATGTTCCCACATGTGATAATTTCTCCAATGTTTGACAGTAATATCTTCTGTTCCATGCTAAACTATTATCAGGGTGAAATAAACTACTTCAGCACTTATGGTGTTGCTACAACCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2047426 lncRNA downstream 1546 21781441 ~ 21781669 (-) True G1788664
TU2047423 lncRNA downstream 4993 21777792 ~ 21778222 (-) True G1788661
TU2047325 lncRNA downstream 114789 21664850 ~ 21668426 (-) True G1788570
TU2047323 lncRNA downstream 115660 21664850 ~ 21667555 (-) False G1788570
TU2047240 lncRNA downstream 218611 21564334 ~ 21564604 (-) True G1788496
TU2047640 lncRNA upstream 2265 21787890 ~ 21788186 (-) True G1788859
TU2047641 lncRNA upstream 3233 21788858 ~ 21789151 (-) False LOC110501594
TU2047637 lncRNA upstream 111971 21897596 ~ 21898128 (-) True G1788856
TU2047753 lncRNA upstream 155117 21940742 ~ 21941547 (-) True G1788964
TU2047770 lncRNA upstream 178997 21964622 ~ 21965058 (-) True G1788980
XM_021579266.2 mRNA downstream 16984 21708881 ~ 21766231 (-) True LOC110501591
XM_021579261.2 mRNA downstream 192216 21572564 ~ 21590999 (-) True LOC110501588
XM_021579260.2 mRNA downstream 336012 21143084 ~ 21447203 (-) True LOC110501587
XM_021579258.2 mRNA downstream 336015 21143084 ~ 21447200 (-) False LOC110501587
XM_021579269.2 mRNA upstream 2803 21788428 ~ 21913721 (-) False LOC110501594
XM_021579271.2 mRNA upstream 2803 21788428 ~ 21913721 (-) False LOC110501594
XM_021579268.2 mRNA upstream 22685 21808310 ~ 21895607 (-) False LOC110501594
XM_021579267.2 mRNA upstream 22685 21808310 ~ 21913721 (-) False LOC110501594
XR_002470225.2 mRNA upstream 23046 21808671 ~ 21913721 (-) False LOC110501594
TU2045833 other downstream 1327232 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 1437201 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 2124115 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 2461356 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 2604031 19175567 ~ 19179184 (-) True LOC110501547
TU2047639 other upstream 5131 21790756 ~ 21820945 (-) True LOC110501594
TU2048419 other upstream 632505 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 1378856 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 1647369 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 2541104 24326729 ~ 24327127 (-) True G1791405

Expression Profile