RNA id: TU2047788


Basic Information

Item Value
RNA id TU2047788
length 268
lncRNA type intronic
GC content 0.42
exon number 1
gene id G1788996
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21988978 ~ 21989245 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctcactcacacacacagtctcgtataactaaccttgtggggacacattTCAGTCCCATTCcaaatcctattttccttaacactaaccttaacccctaatcctagctcctaaccttaaaACAAACCCTAGCGCCTAACCCTAAAACAAATTCTCTCCTTAACCCTAAAACAAATTCTCTCCTTAAACCTAACCCCCCTAGAagtagcatttgaccttgtggggactaacaaaatgctactattttacacacacacccttcccaaC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2047786 lncRNA downstream 1738 21987027 ~ 21987240 (-) True G1788994
TU2047785 lncRNA downstream 2269 21986478 ~ 21986709 (-) True G1788993
TU2047784 lncRNA downstream 5748 21982855 ~ 21983230 (-) True G1788992
TU2047782 lncRNA downstream 7099 21981661 ~ 21981879 (-) True G1788990
TU2047780 lncRNA downstream 10360 21978386 ~ 21978618 (-) True G1788988
TU2047791 lncRNA upstream 4904 21994149 ~ 21994387 (-) True G1788999
TU2047792 lncRNA upstream 7504 21996749 ~ 21997036 (-) True G1789000
TU2047793 lncRNA upstream 9355 21998600 ~ 21998967 (-) True G1789001
TU2047796 lncRNA upstream 10742 21999987 ~ 22000187 (-) True G1789004
TU2047799 lncRNA upstream 16696 22005941 ~ 22006144 (-) True G1789007
XM_021579277.2 mRNA downstream 31274 21936514 ~ 21957704 (-) True stk17b
XM_021579275.2 mRNA downstream 31284 21936514 ~ 21957694 (-) False stk17b
XM_021579276.2 mRNA downstream 31284 21936514 ~ 21957694 (-) False stk17b
XM_036958958.1 mRNA downstream 52564 21922800 ~ 21936414 (-) False ftcdnl1
XM_036958960.1 mRNA upstream 249933 22239178 ~ 22636495 (-) False LOC110502069
XM_036958961.1 mRNA upstream 249933 22239178 ~ 22636505 (-) False LOC110502069
XM_036958962.1 mRNA upstream 251500 22240745 ~ 22636498 (-) False LOC110502069
XM_036958963.1 mRNA upstream 251500 22240745 ~ 22636506 (-) False LOC110502069
XM_021579286.2 mRNA upstream 1001449 22990694 ~ 22996267 (-) True LOC110501602
TU2047639 other downstream 168033 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 1532995 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 1642964 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 2329878 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 2667119 19321188 ~ 19321859 (-) True G1785753
TU2048419 other upstream 428885 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 1175236 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 1443749 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 2337484 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 2859346 24848591 ~ 24849752 (-) True G1792342

Expression Profile