RNA id: TU2047839


Basic Information

Item Value
RNA id TU2047839
length 853
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1789047
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 22083635 ~ 22091952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aattttatgggaaaaatgactgatttacagttcatgggggttgcctaatcacacatatgaagttttggacagatctgacttttttaacccttcgaaacagcccctgagacaccaattatggcacttccggttggtacaggaagctataagtcaacacatatcctcattggggtatgcttttacagaatcctgagttttaagtctttacgttcagaactgactgatttacacagggttgaatgcactatgtctatcaaactgcaaggcagggtatggatatacacttttagggtgattttaaccacttctggttggtccaggaagcttagaatcaacacaggtagacctcatagtggcctgattggactgtcaccgaagacaggttcatacggcattcataacccacataggcttcaggttgaatttaggggtgcaggcaatgtattcctatggggagagatgtcattgtaatctgtgagatcaaaaaaccctgttttagtgtgaagggttaatgccacatggtcacggttaggcttgttgagatcgggaggaccttaggaacattcatgtggtggaatttttcttctcaccctaacggttctctcactgtcactcaaaagcaaatgacattgtggggcaggcttcattttgggcctactattctaatggtcggttattgtgttatttcagaaaatcatagaaaatcacagaaatgtcgcagagctccgcagcacactttaaaaagattcgtatgaacaccctgcaactggatctgtaaccgttgaaaaaaaaaacgcctatttgtgaccatcaccaatttgtcattgttccgtttctcttaaatgacgataga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2047800 lncRNA downstream 77007 22006398 ~ 22006628 (-) True G1789008
TU2047799 lncRNA downstream 77491 22005941 ~ 22006144 (-) True G1789007
TU2047796 lncRNA downstream 83448 21999987 ~ 22000187 (-) True G1789004
TU2047793 lncRNA downstream 84668 21998600 ~ 21998967 (-) True G1789001
TU2047792 lncRNA downstream 86599 21996749 ~ 21997036 (-) True G1789000
TU2047856 lncRNA upstream 44845 22136797 ~ 22137042 (-) True G1789062
TU2047860 lncRNA upstream 46616 22138568 ~ 22144965 (-) True G1789066
TU2047868 lncRNA upstream 66869 22158821 ~ 22164293 (-) False G1789072
TU2047869 lncRNA upstream 66869 22158821 ~ 22164963 (-) True G1789072
TU2047872 lncRNA upstream 74498 22166450 ~ 22167554 (-) True G1789075
XM_021579278.2 mRNA downstream 62281 21969152 ~ 22021354 (-) False hecw2a
XM_021579280.2 mRNA downstream 62281 21969152 ~ 22021354 (-) False hecw2a
XR_005038799.1 mRNA downstream 62281 21973037 ~ 22021354 (-) False hecw2a
XM_021579277.2 mRNA downstream 125931 21936514 ~ 21957704 (-) True stk17b
XM_021579275.2 mRNA downstream 125941 21936514 ~ 21957694 (-) False stk17b
XM_036958960.1 mRNA upstream 147226 22239178 ~ 22636495 (-) False LOC110502069
XM_036958961.1 mRNA upstream 147226 22239178 ~ 22636505 (-) False LOC110502069
XM_036958962.1 mRNA upstream 148793 22240745 ~ 22636498 (-) False LOC110502069
XM_036958963.1 mRNA upstream 148793 22240745 ~ 22636506 (-) False LOC110502069
XM_021579286.2 mRNA upstream 898742 22990694 ~ 22996267 (-) True LOC110501602
TU2047639 other downstream 262690 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 1627652 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 1737621 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 2424535 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 2761776 19321188 ~ 19321859 (-) True G1785753
TU2048419 other upstream 326178 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 1072529 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 1341042 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 2234777 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 2756639 24848591 ~ 24849752 (-) True G1792342

Expression Profile