RNA id: TU2047856


Basic Information

Item Value
RNA id TU2047856
length 246
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1789062
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 22136797 ~ 22137042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcgcttagaccgagcgagctacggtcaagcgggatatctcgttgaagtcggcacagtctggagactatggtgatgccattttttgtgttgatttcagaatgccattttggtgatggtccctctccgtttaaacacattgcaaatgtacaaaagtcaactagcaagtcagtgtccatcagtcaattagatgtcattatgacaccaaactgataccaattgacaccaaacccactttttccaactcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2047839 lncRNA downstream 44845 22083635 ~ 22091952 (-) True G1789047
TU2047800 lncRNA downstream 130169 22006398 ~ 22006628 (-) True G1789008
TU2047799 lncRNA downstream 130653 22005941 ~ 22006144 (-) True G1789007
TU2047796 lncRNA downstream 136610 21999987 ~ 22000187 (-) True G1789004
TU2047793 lncRNA downstream 137830 21998600 ~ 21998967 (-) True G1789001
TU2047860 lncRNA upstream 1526 22138568 ~ 22144965 (-) True G1789066
TU2047868 lncRNA upstream 21779 22158821 ~ 22164293 (-) False G1789072
TU2047869 lncRNA upstream 21779 22158821 ~ 22164963 (-) True G1789072
TU2047872 lncRNA upstream 29408 22166450 ~ 22167554 (-) True G1789075
TU2047883 lncRNA upstream 38487 22175529 ~ 22175904 (-) True G1789085
XM_021579278.2 mRNA downstream 115443 21969152 ~ 22021354 (-) False hecw2a
XM_021579280.2 mRNA downstream 115443 21969152 ~ 22021354 (-) False hecw2a
XR_005038799.1 mRNA downstream 115443 21973037 ~ 22021354 (-) False hecw2a
XM_021579277.2 mRNA downstream 179093 21936514 ~ 21957704 (-) True stk17b
XM_021579276.2 mRNA downstream 179103 21936514 ~ 21957694 (-) False stk17b
XM_036958960.1 mRNA upstream 102136 22239178 ~ 22636495 (-) False LOC110502069
XM_036958961.1 mRNA upstream 102136 22239178 ~ 22636505 (-) False LOC110502069
XM_036958962.1 mRNA upstream 103703 22240745 ~ 22636498 (-) False LOC110502069
XM_036958963.1 mRNA upstream 103703 22240745 ~ 22636506 (-) False LOC110502069
XM_021579286.2 mRNA upstream 853652 22990694 ~ 22996267 (-) True LOC110501602
TU2047639 other downstream 315852 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 1680814 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 1790783 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 2477697 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 2814938 19321188 ~ 19321859 (-) True G1785753
TU2048419 other upstream 281088 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 1027439 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 1295952 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 2189687 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 2711549 24848591 ~ 24849752 (-) True G1792342

Expression Profile