RNA id: TU2047872


Basic Information

Item Value
RNA id TU2047872
length 653
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G1789075
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 22166450 ~ 22167554 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttttcccgattttttccgatttttttccgattttttccgatttttttcccgtttttttcttattttttttccgattttttttccgattttttccgattttttccgattttttttccgattttttccgatttttccgatttttttcccgatttttttccgatttttttccgaaaaatttgcaatttctgaggctggtaactctaatgaacttatcctctacagcagaggtaactctgggtcttcctttcctgtggcggtcctcatgagagccagtttcatcatagcgcttgatggtttttgcgactgcatttgaagaaacgtCCACAGTTTTTGAAaagttccgtattgactgaccttcatcattaaagtaatgatggactgttgtttctctttgcttatttgagctgttattgccataacATGGCAAGTCTttcccaaatagggctatcttctgtataccacctctaccttgtcacaacacaacggaagaaaaatcgggaaaaaaaatcagaaaaaaaatcggaaaaaaaaacccgaaaataaACCCgaaaaaaaaaattggaaaaaaaatccggaaaaaaatcggaaaaaaattccgAAAAAAAACCccgaaaaaaaatccgaaaaaaaatccggaaaaaaaatcgggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2047869 lncRNA downstream 1487 22158821 ~ 22164963 (-) True G1789072
TU2047868 lncRNA downstream 2157 22158821 ~ 22164293 (-) False G1789072
TU2047860 lncRNA downstream 21485 22138568 ~ 22144965 (-) True G1789066
TU2047856 lncRNA downstream 29408 22136797 ~ 22137042 (-) True G1789062
TU2047839 lncRNA downstream 74498 22083635 ~ 22091952 (-) True G1789047
TU2047883 lncRNA upstream 7975 22175529 ~ 22175904 (-) True G1789085
TU2047910 lncRNA upstream 12410 22179964 ~ 22180407 (-) True G1789112
TU2047911 lncRNA upstream 13165 22180719 ~ 22181003 (-) True G1789113
TU2047922 lncRNA upstream 28150 22195704 ~ 22195922 (-) True G1789124
TU2047938 lncRNA upstream 49296 22216850 ~ 22217056 (-) True G1789140
XM_021579278.2 mRNA downstream 145096 21969152 ~ 22021354 (-) False hecw2a
XM_021579280.2 mRNA downstream 145096 21969152 ~ 22021354 (-) False hecw2a
XR_005038799.1 mRNA downstream 145096 21973037 ~ 22021354 (-) False hecw2a
XM_021579277.2 mRNA downstream 208746 21936514 ~ 21957704 (-) True stk17b
XM_021579276.2 mRNA downstream 208756 21936514 ~ 21957694 (-) False stk17b
XM_036958960.1 mRNA upstream 71624 22239178 ~ 22636495 (-) False LOC110502069
XM_036958961.1 mRNA upstream 71624 22239178 ~ 22636505 (-) False LOC110502069
XM_036958962.1 mRNA upstream 73191 22240745 ~ 22636498 (-) False LOC110502069
XM_036958963.1 mRNA upstream 73191 22240745 ~ 22636506 (-) False LOC110502069
XM_021579286.2 mRNA upstream 823140 22990694 ~ 22996267 (-) True LOC110501602
TU2047639 other downstream 345505 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 1710467 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 1820436 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 2507350 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 2844591 19321188 ~ 19321859 (-) True G1785753
TU2048419 other upstream 250576 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 996927 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 1265440 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 2159175 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 2681037 24848591 ~ 24849752 (-) True G1792342

Expression Profile