RNA id: TU2047910


Basic Information

Item Value
RNA id TU2047910
length 444
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1789112
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 22179964 ~ 22180407 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caatgaaatagggtgcaggccaggcagcaggctgttagccagcctgccagcatagtggagtctgccactagcacagtcagtgtagtcagctcagctatcaccattgagaccgtgtctgtgcctcgacctaggttgggcaaaactaaacatggcggtgttcgccttagcaatctcactaggataaagaccacctccattcctgtcattattgaaagagatcatgatacctcacatctcaaaatagggctacttaatgttagatcccttacttcaaaggcaattatagtcaatgatctaatcactgatcataatcttgatgtgattggcctgactgaaacatggcttaagcctgatgaatttactgtgttaaatgaggcctcacctcctggctacactagtgaccatatcccccgtgcatcccgcaaaggcggaggtgttgctaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2047883 lncRNA downstream 4060 22175529 ~ 22175904 (-) True G1789085
TU2047872 lncRNA downstream 12410 22166450 ~ 22167554 (-) True G1789075
TU2047869 lncRNA downstream 15001 22158821 ~ 22164963 (-) True G1789072
TU2047868 lncRNA downstream 15671 22158821 ~ 22164293 (-) False G1789072
TU2047860 lncRNA downstream 34999 22138568 ~ 22144965 (-) True G1789066
TU2047911 lncRNA upstream 312 22180719 ~ 22181003 (-) True G1789113
TU2047922 lncRNA upstream 15297 22195704 ~ 22195922 (-) True G1789124
TU2047938 lncRNA upstream 36443 22216850 ~ 22217056 (-) True G1789140
TU2047946 lncRNA upstream 41149 22221556 ~ 22221824 (-) True G1789146
TU2047959 lncRNA upstream 47796 22228203 ~ 22228406 (-) True G1789159
XM_021579278.2 mRNA downstream 158610 21969152 ~ 22021354 (-) False hecw2a
XM_021579280.2 mRNA downstream 158610 21969152 ~ 22021354 (-) False hecw2a
XR_005038799.1 mRNA downstream 158610 21973037 ~ 22021354 (-) False hecw2a
XM_021579277.2 mRNA downstream 222260 21936514 ~ 21957704 (-) True stk17b
XM_021579276.2 mRNA downstream 222270 21936514 ~ 21957694 (-) False stk17b
XM_036958960.1 mRNA upstream 58771 22239178 ~ 22636495 (-) False LOC110502069
XM_036958961.1 mRNA upstream 58771 22239178 ~ 22636505 (-) False LOC110502069
XM_036958962.1 mRNA upstream 60338 22240745 ~ 22636498 (-) False LOC110502069
XM_036958963.1 mRNA upstream 60338 22240745 ~ 22636506 (-) False LOC110502069
XM_021579286.2 mRNA upstream 810287 22990694 ~ 22996267 (-) True LOC110501602
TU2047639 other downstream 359019 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 1723981 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 1833950 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 2520864 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 2858105 19321188 ~ 19321859 (-) True G1785753
TU2048419 other upstream 237723 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 984074 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 1252587 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 2146322 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 2668184 24848591 ~ 24849752 (-) True G1792342

Expression Profile