RNA id: TU2047973


Basic Information

Item Value
RNA id TU2047973
length 885
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G1789168
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 22234719 ~ 22235760 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAATAGTTTTATGTAAAAAGAAATAAGTTAAGAGTCCGATCAGCAGCTCTTCTTGGTCTGtatcctctccttcacccctccCCATCCCAAAACACACACCCCTTTGCCCCGACTGTTCTTCACCCACCACAGTGTtcaaaacatttttaacaaaacaaacaaatCTCATCCTTTGTCTATCCTTCTGTTCAACGGTCCATTCAGATCTAACGGTTGGTTAACAGTTAGTTAGATTTacattctgtttgtctgtcctTTAGATATTAAGGTCCAGTCCAGAACCAACCCCACAGGTGTTGAGCTGAAGATTGGATAGATGTGACATAGCAAAACTGTTCCTTTATAGCCTACCAGAGGGCAGAGTGGAGCTGCCATATTGCTTATTTAAATACAATAATGTCAGATATACATGAAGTATGTAGAGGGTAGGGGCTAGGAGGTAGGGGTAAGGGGCTAGGGGAAGTGGGGGTAAGGGCTagggcagcgtttcccaaactcagtcctcgggaaaccctgggctAGGGGCAAGGTTAAGTTTCTAGAGGGTAGGGGCTAGGTGAAATTGCCTAGGGAGTAGGGGCTAGAAGTGCCTATAACTTATAGGGGGCCATATCTAAGGGTTGTTTCTGGACGAGACCATGGAAAGCATCTACTTCCCATAGAACATCTCCAGTAGGACATCCTCCATGTTGACAGCTCCGATGACGGGCTTGAAGAAGAGCTGTGCAACCACGGCGGGGCTGATGGCCCTAAGCATGGACAGGGTGATGAGCAGTTTGGCGAAGCGTGTGGTGTCGTCCCGGTGGATCAGCTTCACGTGCTCGTTGAGCGCCTGGTGAGCCTCGCGCCGCAGTGACTGGATGTAGTGGAGGTAGCGCAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2047959 lncRNA downstream 6313 22228203 ~ 22228406 (-) True G1789159
TU2047946 lncRNA downstream 12895 22221556 ~ 22221824 (-) True G1789146
TU2047938 lncRNA downstream 17663 22216850 ~ 22217056 (-) True G1789140
TU2047922 lncRNA downstream 38797 22195704 ~ 22195922 (-) True G1789124
TU2047911 lncRNA downstream 53716 22180719 ~ 22181003 (-) True G1789113
TU2048365 lncRNA upstream 102585 22338345 ~ 22339193 (-) True G1789528
TU2048412 lncRNA upstream 163276 22399036 ~ 22400728 (-) True G1789574
TU2048425 lncRNA upstream 194728 22430488 ~ 22430688 (-) True G1789587
TU2048463 lncRNA upstream 253098 22488858 ~ 22498544 (-) False G1789620
TU2048464 lncRNA upstream 253098 22488858 ~ 22496874 (-) False G1789620
XM_021579278.2 mRNA downstream 213365 21969152 ~ 22021354 (-) False hecw2a
XM_021579280.2 mRNA downstream 213365 21969152 ~ 22021354 (-) False hecw2a
XR_005038799.1 mRNA downstream 213365 21973037 ~ 22021354 (-) False hecw2a
XM_021579277.2 mRNA downstream 277015 21936514 ~ 21957704 (-) True stk17b
XM_021579276.2 mRNA downstream 277025 21936514 ~ 21957694 (-) False stk17b
XM_036958960.1 mRNA upstream 3418 22239178 ~ 22636495 (-) False LOC110502069
XM_036958961.1 mRNA upstream 3418 22239178 ~ 22636505 (-) False LOC110502069
XM_036958962.1 mRNA upstream 4985 22240745 ~ 22636498 (-) False LOC110502069
XM_036958963.1 mRNA upstream 4985 22240745 ~ 22636506 (-) False LOC110502069
XM_021579286.2 mRNA upstream 754934 22990694 ~ 22996267 (-) True LOC110501602
TU2047639 other downstream 413774 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 1778736 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 1888705 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 2575619 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 2912860 19321188 ~ 19321859 (-) True G1785753
TU2048419 other upstream 182370 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 928721 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 1197234 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 2090969 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 2612831 24848591 ~ 24849752 (-) True G1792342

Expression Profile