RNA id: TU2048412


Basic Information

Item Value
RNA id TU2048412
length 1642
lncRNA type intronic
GC content 0.34
exon number 2
gene id G1789574
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 22399036 ~ 22400728 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggagagtggttatagactagatattattatagagacaagaggagagacaagaggagagtgattacagactagatattattatagagatggaagagagacaagaggagaatgGTTATtgactagatattattatagagacaagaggagagtgattacagactagatattattatagagatggaggagagacaagaggagagtggttatagactagatattattatatagatggaagagagacaagaggagaatgGTTATtgactagatattattatagagacaagaggagagtggttggagactagatattattatagagacaagaggagagtgattacagactagatattattatagagatggaggagagacaagaggagagttgttatagactagatattattatagagacaagaggagagtggttatagactagatattattatTGAGACgaaagagacaagaggagagtggttatagactagatattattatagagacaagaggagagtggttatagactagatattattatagagacaaaaGGAGAGTGGTTGTAGACaagatattattatagagacaagaggagagtggttatagactagatattattatagaggCAAGAGGGGAGACGAGGAGAATGGTtatagactagatattattatagagacaagaggagagtggttagagactagatattattatagagacaagagaggagacaagaggagagtggttatagactagatattattatagaggcaagaggagagtggttatagactagatattattatagagatggaggagagacaagaggagaatggttatagactagatattattatagagacaagaggagaatggttatagactagatattattatagagacaagaggagaatggttatagactagatattattatagagatggaggagagacaagaggagaatggttatagactagatattattatagagacaagaggagaatggttatagactagatattattatagagacaagaggagagtggttatatactatatattattatagagacaagaggagagacaagaggagagtggttatagactagatattattatagagtcaagaggagagtggttatagactagatattattatagagacaagaggagagtggttatagactagatagtattatagagacaagaggagagtggttgtaaactagatattattatagagacaagaggagagcggttgtagactagatattattatagagacaagaggagagtggtaatagactagatattattagagacaagaggagagtggttatagactagatattattatacagacaagaggagagtggtaatagactagatattattagagacaagaggagagcggttgtagactagatattattatagagacaagaggagagtggttttagactagatattattatacagacaagaggagagtggtaatagactagatattattagagacaagaggagagcggttgtagactagatattattatagagacaagaggagagtcaAGAGGCCTAGAAAAGAAAAGAGTTGAAGAATAGGTTGACTGTTGTGATGGTTTACTTGTAAGATAGTGTTTCGGTCC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2048365 lncRNA downstream 59843 22338345 ~ 22339193 (-) True G1789528
TU2047973 lncRNA downstream 163276 22234719 ~ 22235760 (-) True G1789168
TU2047959 lncRNA downstream 170630 22228203 ~ 22228406 (-) True G1789159
TU2047946 lncRNA downstream 177212 22221556 ~ 22221824 (-) True G1789146
TU2047938 lncRNA downstream 181980 22216850 ~ 22217056 (-) True G1789140
TU2048425 lncRNA upstream 29760 22430488 ~ 22430688 (-) True G1789587
TU2048463 lncRNA upstream 88130 22488858 ~ 22498544 (-) False G1789620
TU2048464 lncRNA upstream 88130 22488858 ~ 22496874 (-) False G1789620
TU2048467 lncRNA upstream 96081 22496809 ~ 22498544 (-) False G1789620
TU2048469 lncRNA upstream 96683 22497411 ~ 22498544 (-) True G1789620
XM_021579278.2 mRNA downstream 377682 21969152 ~ 22021354 (-) False hecw2a
XM_021579280.2 mRNA downstream 377682 21969152 ~ 22021354 (-) False hecw2a
XR_005038799.1 mRNA downstream 377682 21973037 ~ 22021354 (-) False hecw2a
XM_021579277.2 mRNA downstream 441332 21936514 ~ 21957704 (-) True stk17b
XM_021579276.2 mRNA downstream 441342 21936514 ~ 21957694 (-) False stk17b
XM_021579286.2 mRNA upstream 589966 22990694 ~ 22996267 (-) True LOC110501602
XM_036959585.1 mRNA upstream 623242 23023970 ~ 23042872 (-) True LOC118943636
XM_021579287.2 mRNA upstream 655916 23056644 ~ 23079505 (-) False dcbld2
XM_021579288.2 mRNA upstream 655916 23056644 ~ 23079508 (-) True dcbld2
XM_036959550.1 mRNA upstream 797038 23197766 ~ 23235686 (-) False LOC110502006
TU2047639 other downstream 578091 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 1943053 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 2053022 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 2739936 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 3077177 19321188 ~ 19321859 (-) True G1785753
TU2048419 other upstream 17402 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 763753 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 1032266 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 1926001 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 2447863 24848591 ~ 24849752 (-) True G1792342

Expression Profile