RNA id: TU2048469


Basic Information

Item Value
RNA id TU2048469
length 444
lncRNA type intronic
GC content 0.42
exon number 3
gene id G1789620
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 22488858 ~ 22498544 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtatattgtatacattgttgctttggcaatattgacacaatgtttttcatgccaataaagcagcttgaatttgaatttgaatttgaagagagagcgagagagagagagagcgagagagagagagagcaagagagagagagagagaaagcaatagagagagaaagcaagagagagaaagcaatagagagagaaagcaatagagagagcaatagagagagagcaatagagagagagcaatagagagagagagcaatagagagagagagcaatagagagagagagagcaatagagcgagagagcaatagagcgagagcaatagagagagagagcaatagagagtgagagagcaatagagagtgaaagagcaatagagagagagagagcaatagagagagagagagcaatagagagagagcaatagagagagagcaatagagcgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2048464 lncRNA downstream 537 22488858 ~ 22496874 (-) False G1789620
TU2048425 lncRNA downstream 66723 22430488 ~ 22430688 (-) True G1789587
TU2048412 lncRNA downstream 96683 22399036 ~ 22400728 (-) True G1789574
TU2048365 lncRNA downstream 158218 22338345 ~ 22339193 (-) True G1789528
TU2047973 lncRNA downstream 261651 22234719 ~ 22235760 (-) True G1789168
TU2048461 lncRNA upstream 3111 22501655 ~ 22520671 (-) True G1789619
TU2048508 lncRNA upstream 56474 22555018 ~ 22555252 (-) True G1789659
TU2048512 lncRNA upstream 59705 22558249 ~ 22558473 (-) True G1789663
TU2048513 lncRNA upstream 60633 22559177 ~ 22559548 (-) True G1789664
TU2048520 lncRNA upstream 67686 22566230 ~ 22566801 (-) True G1789671
XM_021579278.2 mRNA downstream 476057 21969152 ~ 22021354 (-) False hecw2a
XM_021579280.2 mRNA downstream 476057 21969152 ~ 22021354 (-) False hecw2a
XR_005038799.1 mRNA downstream 476057 21973037 ~ 22021354 (-) False hecw2a
XM_021579277.2 mRNA downstream 539707 21936514 ~ 21957704 (-) True stk17b
XM_021579276.2 mRNA downstream 539717 21936514 ~ 21957694 (-) False stk17b
XM_021579286.2 mRNA upstream 492150 22990694 ~ 22996267 (-) True LOC110501602
XM_036959585.1 mRNA upstream 525426 23023970 ~ 23042872 (-) True LOC118943636
XM_021579287.2 mRNA upstream 558100 23056644 ~ 23079505 (-) False dcbld2
XM_021579288.2 mRNA upstream 558100 23056644 ~ 23079508 (-) True dcbld2
XM_036959550.1 mRNA upstream 699222 23197766 ~ 23235686 (-) False LOC110502006
TU2048419 other downstream 77913 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 676466 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 2041428 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 2151397 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 2838311 19656282 ~ 19659100 (-) True znf142
TU2049161 other upstream 665937 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 934450 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 1828185 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 2350047 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 2358280 24856824 ~ 24857885 (-) True G1792345

Expression Profile