RNA id: TU2048513


Basic Information

Item Value
RNA id TU2048513
length 372
lncRNA type intronic
GC content 0.49
exon number 1
gene id G1789664
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 22559177 ~ 22559548 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccctcatcctccacatacaacacccgttctgtcagtcacattctgttaaaggtccccaaggcACACCCATCCCTGGGCAGCtagtcttttcagttcactgcagcttgCGACTgcaacgagctgcaacaaactggacagttttatctcaatttctaccctctgtagtgtcttatAGTCAGATGCCAagcggttgccataccaggcggtgatggaactggtcaggatgctctcgatggtgcagctgtagaactttttgaggatctggggacccatgccaaatcttttcagtctcctgagggggaaaaggttttgttgtgccctcttcatgactgtcttggtgtgtttggaccatgatagtttgttggtgctGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2048512 lncRNA downstream 704 22558249 ~ 22558473 (-) True G1789663
TU2048508 lncRNA downstream 3925 22555018 ~ 22555252 (-) True G1789659
TU2048461 lncRNA downstream 38506 22501655 ~ 22520671 (-) True G1789619
TU2048467 lncRNA downstream 60633 22496809 ~ 22498544 (-) False G1789620
TU2048469 lncRNA downstream 60633 22497411 ~ 22498544 (-) True G1789620
TU2048520 lncRNA upstream 6682 22566230 ~ 22566801 (-) True G1789671
TU2048525 lncRNA upstream 12173 22571721 ~ 22571927 (-) True G1789676
TU2048309 lncRNA upstream 13569 22573117 ~ 22636007 (-) True LOC110502069
TU2048629 lncRNA upstream 206205 22765753 ~ 22766067 (-) True G1789773
TU2048647 lncRNA upstream 215490 22775038 ~ 22775276 (-) True G1789791
XM_021579278.2 mRNA downstream 537823 21969152 ~ 22021354 (-) False hecw2a
XM_021579280.2 mRNA downstream 537823 21969152 ~ 22021354 (-) False hecw2a
XR_005038799.1 mRNA downstream 537823 21973037 ~ 22021354 (-) False hecw2a
XM_021579277.2 mRNA downstream 601473 21936514 ~ 21957704 (-) True stk17b
XM_021579276.2 mRNA downstream 601483 21936514 ~ 21957694 (-) False stk17b
XM_021579286.2 mRNA upstream 431146 22990694 ~ 22996267 (-) True LOC110501602
XM_036959585.1 mRNA upstream 464422 23023970 ~ 23042872 (-) True LOC118943636
XM_021579287.2 mRNA upstream 497096 23056644 ~ 23079505 (-) False dcbld2
XM_021579288.2 mRNA upstream 497096 23056644 ~ 23079508 (-) True dcbld2
XM_036959550.1 mRNA upstream 638218 23197766 ~ 23235686 (-) False LOC110502006
TU2048419 other downstream 139679 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 738232 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 2103194 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 2213163 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 2900077 19656282 ~ 19659100 (-) True znf142
TU2049161 other upstream 604933 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 873446 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 1767181 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 2289043 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 2297276 24856824 ~ 24857885 (-) True G1792345

Expression Profile